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Author	Grant Number	Interest Area	Topic	Organization	River Segment	Year	Title	Results
Farrell, E.P.	TP/01/16	Resource/Key Species		HDR, Inc.	Tributaries	2.019	Utilizing DNA Sequencing and Land Use Data for an Improved Understanding of Fecal contamination in Hudson River Tributaries	Author(s): Farrell, E.P., O'Mullan, G.D. Grant Number(s): TP/01/16 Title: Utilizing DNA Sequencing and Land Use Data for an Improved Understanding of Fecal contamination in Hudson River Tributaries Year: 2019 Organization: HDR, Inc. Pages: 25 Publication: HRF, report River Segment: Tributaries Area of Interest: Resource/Key Species, Subject: Summary: Tributary mixing zones into the Hudson represent areas of both the highest frequency and magnitude of fecal indicator bacteria (FIB) contamination. The frequency and magnitude of contamination vary among tributaries and it is hypothesized that this indicates differing fecal sources. While EPA approved cultivation-based methods for the enumeration of FIB provide powerful tools for watershed monitoring, mitigation decisions require additional information related to the source of fecal bacteria. Data from cultivation based FIB and microbial community profiles based on high throughput DNA sequencing were analyzed in combination with land use patterns to better understand the sources of fecal contamination in six tributaries.
						1.984	1984 Hudson River striped bass tagging program	Author(s): Grant Number(s): Title: 1984 Hudson River striped bass tagging program Year: 1984 Organization: Pages: 31 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: A gear and tag evaluation was conducted from April through June 1984, with tags returned through February 1985.
						1.986	1985 Hudson River striped bass tagging program	Author(s): Grant Number(s): Title: 1985 Hudson River striped bass tagging program Year: 1986 Organization: Pages: 7 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: Biological monitoring plan of striped bass for release period of April-June 1984 and November-May 1986.
						1.987	1986 Hudson River striped bass tagging program	Author(s): Grant Number(s): Title: 1986 Hudson River striped bass tagging program Year: 1987 Organization: Pages: 48 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: Biological monitoring of striped bass for release period November-May 1986 and Decmeber-June 1987.
Cochran, J.K.	004/94A	Toxic Substances	PCBs	SUNY at Stony Brook	Lower Estuary	1.999	234Th and 7Be as tracers for the transport and dynamics of suspended particles in a partially mixed estuary	Author(s): Cochran, J.K., Feng, H., Hirschberg, D.J. Grant Number(s): 004/94A Title: 234Th and 7Be as tracers for the transport and dynamics of suspended particles in a partially mixed estuary Year: 1999 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: 234Th and 7Be activities were measured in suspended and bottom sediments under varying conditions of river flow to evaluate the relative importance of local sediment resuspension and advection of suspended sediments through the estuary.
Cochran, J.K.	004/94A	Toxic Substances	PCBs	SUNY at Stony Brook	Lower Estuary	1.999	234Th and7Be as Tracers for the Sources of Particles to the Turbidity Maximum of the Hudson River Estuary	Author(s): Cochran, J.K., Feng, H., Hirschberg, D.J. Grant Number(s): 004/94A Title: 234Th and7Be as Tracers for the Sources of Particles to the Turbidity Maximum of the Hudson River Estuary Year: 1999 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: The natural radionuclides234Th (half-life=24·1 days) and7Be (half-life=53·3 days) were measured in suspended particles of the turbidity maximum zone of the lower Hudson River estuary during several tidal cycles in August 1995 in an effort to understand the dynamics and sources of particles to this zone.
Flood, R.D.	TP/08/03	Information Management	Information Management	SUNY Stony Brook	Lower Estuary	2.004	A Baseline Inventory of Multibeam Acoustic Targets from the Hudson River Between New York Harbor and Wappingers Falls	Author(s): Flood, R.D., Napolitano, M.F. Grant Number(s): TP/08/03 Title: A Baseline Inventory of Multibeam Acoustic Targets from the Hudson River Between New York Harbor and Wappingers Falls Year: 2004 Organization: SUNY Stony Brook Pages: 29 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Information Management, Information Management Subject: Summary: A detailed record of the Hudson floor from the Verrazzano Narrows to Troy was produced using multibeam swath bathymetry. The mapping process revealed hundreds of possible anthropogenic targets, including shipwrecks, for study and protection.
McDonough, K.B.						1.976	A Benthic Index of Environmental Quality for the New York Bight Apex and Raritan Bay	Author(s): McDonough, K.B. Grant Number(s): Title: A Benthic Index of Environmental Quality for the New York Bight Apex and Raritan Bay Year: 1976 Organization: Pages: 89 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: An MS thesis providing an index of environmental quality based on the abundance and diversity of the benthic invertebrate community.
Cullen, J. Douglas, Jr.						1.984	A Biogeochemical Survey: copper and nickel in the hard clam, Mercenaria mercenaria, relative to concentrations in the water column in a New England estuary	Author(s): Cullen, J. Douglas, Jr. Grant Number(s): Title: A Biogeochemical Survey: copper and nickel in the hard clam, Mercenaria mercenaria, relative to concentrations in the water column in a New England estuary Year: 1984 Organization: Pages: 141 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: An MS thesis on the relationship between concentrations of nickel and copper in tissues of Mercenaria mercenaria and in the water column to which the organisms were exposed in Narragansett Bay.
Courtenay, S.C.	GF/02/92	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	1.994	A Biomarker Approach to Assessing Xenobiotic Exposure in Atlantic Tomcod from the North American Atlantic Coast	Author(s): Courtenay, S.C., Grunwald, C.M., Kreamer, G-L., Reichert, W.L., Stein, J.E., Wirgin, I.I. Grant Number(s): GF/02/92 Title: A Biomarker Approach to Assessing Xenobiotic Exposure in Atlantic Tomcod from the North American Atlantic Coast Year: 1994 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Bioassays to detect exposure to polyaromatic hydrocarbons were carried out on Atlantic tomcod from six river systems, ranging from pristine to relatively polluted. The Hudson River fish exhibited the highest response, suggesting high levels of exposure to PAH's relative to the other systems studied
Blair, E.A.	001/89A/003	Public Policy	Public Policy	HR Nat'l Estuarine Res. Reserve	Entire Estuary	1.989	A Boater's Guide to the Hudson River Estuary	Author(s): Blair, E.A., Mildner, D. Grant Number(s): 001/89A/003 Title: A Boater's Guide to the Hudson River Estuary Year: 1989 Organization: HR Nat'l Estuarine Res. Reserve Pages: 14 Publication: HRF, published by River Segment: Entire Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: A listing of marinas and launch sites on the Hudson Estuary.
Blair, E.A.	001/89A/003	Public Policy	Public Policy	HR Nat'l Estuarine Res. Reserve	Entire Estuary	1.992	A Boater's Guide to the Hudson River Estuary: Final report to the Hudson River Foundation	Author(s): Blair, E.A., Mildner, D. Grant Number(s): 001/89A/003 Title: A Boater's Guide to the Hudson River Estuary: Final report to the Hudson River Foundation Year: 1992 Organization: HR Nat'l Estuarine Res. Reserve Pages: 6 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: A final report about the drafting, reviewing, and finalizing a guide to the estuary for boaters.
Cooper, S.	011/95A	Resource/Key Species	River Herring	Hudsonia Limited	Watershed	1.996	A Catalog of Barriers to Upstream Movement of Migratory Fishes in Hudson River Tributaries	Author(s): Cooper, S., Schmidt, R.E. Grant Number(s): 011/95A Title: A Catalog of Barriers to Upstream Movement of Migratory Fishes in Hudson River Tributaries Year: 1996 Organization: Hudsonia Limited Pages: 185 p Publication: HRF, report River Segment: Watershed Area of Interest: Resource/Key Species, River Herring Subject: Summary: The presence, location, and magnitude of obstructions that may bar upstream migration of anadromous fishes, primarily river herring, in Hudson River tributaries, were documented.
Able, K.W.	001/98A	Resource/Key Species	Biological Communities	Rutgers University	Lower Estuary	2.002	A characterization of juvenile fish assemblages around man-made structures in the New York-New Jersey Harbor Estuary, USA	Author(s): Able, K.W., Duffy-Anderson, J.T., Manderson, J.P. Grant Number(s): 001/98A Title: A characterization of juvenile fish assemblages around man-made structures in the New York-New Jersey Harbor Estuary, USA Year: 2002 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: Collectively, the data suggest that the NY-NJ harbor estuary provides habitat for a number of economically and ecologically important species.
Zalcman, F.	014/02A	Public Policy	Public Policy	Pace Law School	Watershed	2.003	A clean electricity strategy for the Hudson River Valley	Author(s): Zalcman, F. Grant Number(s): 014/02A Title: A clean electricity strategy for the Hudson River Valley Year: 2003 Organization: Pace Law School Pages: 55 p Publication: HRF, report River Segment: Watershed Area of Interest: Public Policy, Public Policy Subject: Summary: This study explores the potential costs and benefits of a Clean Electricuty Plan for the Hudson RIver Valley, including New York City.
						1.998	A cleaner harbor lures water birds to New York	Author(s): Grant Number(s): Title: A cleaner harbor lures water birds to New York Year: 1998 Organization: Pages: Publication: HRF, peer review piece River Segment: Area of Interest: , Subject: Summary: In the last two decades, water bird populations have exploded in NY Harbor despite pollutants.
						2.000	A comparison of congeneric PCB patterns in American eels and striped bass from the Hudson and Delaware River estuaries	Author(s): Grant Number(s): Title: A comparison of congeneric PCB patterns in American eels and striped bass from the Hudson and Delaware River estuaries Year: 2000 Organization: Pages: Publication: HRF, peer review piece River Segment: Area of Interest: , Subject: Summary: Use of existing data sets to assess the patterns of PCB accumulation in American eels and striped bass inhabiting the Hudson and Delaware estuaries.
Ashley, J.T.F.	001/00A	Toxic Substances	PCBs	Academy of Natural Sciences	Entire Estuary	2.001	A comparison of congeneric PCB patterns in American eels and striped bass from the Hudson and Deleware River Estuaries	Author(s): Ashley, J.T.F. Grant Number(s): 001/00A Title: A comparison of congeneric PCB patterns in American eels and striped bass from the Hudson and Deleware River Estuaries Year: 2001 Organization: Academy of Natural Sciences Pages: 33 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: The overall goal of this project was to use existing data sets to compare and contrast the pattern of accumulated PCB congeners in sub-populations of American eel and striped bass inhabiting these two estuaries and surrounding waters.
Courtenay, S.C.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	1.996	A comparison of cytochrome P4501A (CYP1A) mRNA Inducibility in Four Species of Atlantic Coast Anadromous Fishes	Author(s): Courtenay, S.C., Grunwald, C.M., Konkle, B., Pedersen, M., Williams, J., Wirgin, I.I. Grant Number(s): 011/94A Title: A comparison of cytochrome P4501A (CYP1A) mRNA Inducibility in Four Species of Atlantic Coast Anadromous Fishes Year: 1996 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: They hypothesize that diffences in CYP1A mRNA inducibility among individuals, populations, or species might lead to spurious conclusions when using this approach in environmental monitoring programs
Capone, D.G.	014/83B/12	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.985	A Comparison of Procedures for the Separation of Aquatic Bacteria From Sediments for Subsequent Direct Enumeration	Author(s): Capone, D.G., McDaniel, J. Grant Number(s): 014/83B/12 Title: A Comparison of Procedures for the Separation of Aquatic Bacteria From Sediments for Subsequent Direct Enumeration Year: 1985 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A paper on the subject stated in title.
Crivello, J.	013/92A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Lower Estuary	1.995	A Comparison of RT-PCR and Northern Blot Analysis in Quantifying Metallothionein mRNA Levels in Killifish Exposed to Waterborne Cadmium	Author(s): Crivello, J., Kaplan, L., Van Cleef, K., Wirgin, I.I. Grant Number(s): 013/92A, 011/94A Title: A Comparison of RT-PCR and Northern Blot Analysis in Quantifying Metallothionein mRNA Levels in Killifish Exposed to Waterborne Cadmium Year: 1995 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Two methods for quantifying RNA levels in fish exposed to cadmium were evaluated.
Arsenault, J.T.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	1.999	A Comparison of the Dose and Time Response of CYP1A1 mRNA Induction in Chemically Treated Atlantic Tomcod from Two Populations	Author(s): Arsenault, J.T., Courtenay, S.C., Fairchild, W.L., Grunwald, C.M., Kreamer, G-L., Wirgin, I.I. Grant Number(s): 011/94A Title: A Comparison of the Dose and Time Response of CYP1A1 mRNA Induction in Chemically Treated Atlantic Tomcod from Two Populations Year: 1999 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Tomcod were injected with varying levels of PAHs in order to determine the relationship between PAH dose and inducibility of the CYP1A1 gene.
Madden, S.S.	TP/01/03	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	University at Albany	Tributaries	2.004	A Comparison of Water Quality in an Urban and a Well Forested Stream: Patroon Creek and Tenmile Creek, Albany County, New York	Author(s): Madden, S.S., Robinson, G.R. Grant Number(s): TP/01/03 Title: A Comparison of Water Quality in an Urban and a Well Forested Stream: Patroon Creek and Tenmile Creek, Albany County, New York Year: 2004 Organization: University at Albany Pages: 27 Publication: HRF, report River Segment: Tributaries Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: Dissolved ions and macroinvertebrates were examined to determine water quality between two streams in Albany County.
Bonardi, S.	012/93A	Resource/Key Species	Biological Communities	Greenbrook Sanctuary	Lower Estuary	1.994	A Comprehensive Survey of a Talus Slope: A Unique Natural Community on the Hudson River	Author(s): Bonardi, S., Slowik, N. Grant Number(s): 012/93A Title: A Comprehensive Survey of a Talus Slope: A Unique Natural Community on the Hudson River Year: 1994 Organization: Greenbrook Sanctuary Pages: 50 p Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: This document is an inventory of plants and animals on the talus slope of the Palisades.
						1.991	A Conservation Easement Handbook for the Hudson River Waterfront Conservancy	Author(s): Grant Number(s): Title: A Conservation Easement Handbook for the Hudson River Waterfront Conservancy Year: 1991 Organization: Pages: 45 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: The Hudson River Walkway's history and laws of easement.
Jackman, G.W.	TP/04/09	Resource/Key Species	Other Fish	CUNY Graduate Center	Lower Estuary	2.011	A Feasibility Study of the Population Structure and Habitat Usage of Winter Flounder (Pseudopleuronectes americanus) in the Hudson River Estuary Investigated through Otolith Microchemistry	Author(s): Jackman, G.W., Limburg, K.E., Waldman, J.R. Grant Number(s): TP/04/09 Title: A Feasibility Study of the Population Structure and Habitat Usage of Winter Flounder (Pseudopleuronectes americanus) in the Hudson River Estuary Investigated through Otolith Microchemistry Year: 2011 Organization: CUNY Graduate Center Pages: Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Other Fish Subject: Summary: A preliminary investigation was conducted to determine the feasibility of using otolith microchemistry as a stock discrimination method, and as a means to unravel pertinent life history questions relating to winter flounder (Pseudopleuronectes americanus), in the Hudson River Estuary (HRE).
Hoagland, P.	006/15A	Public Policy	Public Policy	Woods Hole Oceanographic Inst.	Lower Estuary	2.017	A Framework for Valuing the Ecosystem Services of Shellfish Restoration in the NY/NJ Harbor Estuary	Author(s): Hoagland, P., Jin, D. Grant Number(s): 006/15A Title: A Framework for Valuing the Ecosystem Services of Shellfish Restoration in the NY/NJ Harbor Estuary Year: 2017 Organization: Woods Hole Oceanographic Inst. Pages: 22 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: A framework for characterizing the net economic values arising from flows of ecosystem services (ESs) associated with the restoration of shellfish beds and oyster reefs in the Hudson River Estuary. This study compiles existing values (including non-market values) of the array of ESs that might be provided by shellfish beds and oyster reefs, model the costs of restoration, and, through simulations, demonstrate how ES values are affected by changing environmental conditions.
Haley, N.	002/96A	Resource/Key Species	Sturgeon	Cornell University	Entire Estuary	1.998	A Gastric Lavage Technique for Characterizing Diets of Sturgeons	Author(s): Haley, N. Grant Number(s): 002/96A Title: A Gastric Lavage Technique for Characterizing Diets of Sturgeons Year: 1998 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: describe a method for safely flushing stomach contents from live sturgeons that addresses problems previously encountered with gastric lavage on these fishes.
Albertson, J.D.	TP/01/92	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	Yale University	Freshwater Tidal	1.993	A GIS-Based Approach for Calculating Groundwater Flow into the Tivoli Bays	Author(s): Albertson, J.D., Barten, P.K. Grant Number(s): TP/01/92 Title: A GIS-Based Approach for Calculating Groundwater Flow into the Tivoli Bays Year: 1993 Organization: Yale University Pages: 14 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: This report summarizes a method that was developed to use a geographic information system (GIS) and a FORTRAN program to site well transects optimally and compute groundwater flow into lake and wetland systems such as the Tivoli Bays.
Bernstein, D.J.	TP/08/02	Information Management	Information Management	SUNY Stony Brook	Lower Estuary	2.003	A GIS-based Model for Predicting the Location of Submerged Prehistoric Archaeological Sites in New York Harbor	Author(s): Bernstein, D.J., Merwin, D.E. Grant Number(s): TP/08/02 Title: A GIS-based Model for Predicting the Location of Submerged Prehistoric Archaeological Sites in New York Harbor Year: 2003 Organization: SUNY Stony Brook Pages: 24 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Information Management, Information Management Subject: Summary: In this study, the patterning of known terrestrial archaeological sites was used to assess underwater archaeological potentional in and around New York Harbor.
						1.993	A Guideline to Restore Anadromous Fish Runs in Selected Tributaries of the NY/NJ Harbor Watershed	Author(s): Grant Number(s): Title: A Guideline to Restore Anadromous Fish Runs in Selected Tributaries of the NY/NJ Harbor Watershed Year: 1993 Organization: Pages: 63 p Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: The purpose of this report is to unite the agencies, dam owners and other important parties to become cooperatively involved in anadromous fish run restoration.
Kiviat, E.	TP/08/98	Resource/Key Species	Reptiles & Amphibians	Univ. of Southwestern Louisiana	Freshwater Tidal	1.999	A Herpetological Survey of Tivoli Bays and Stockport Flats	Author(s): Kiviat, E., Rubbo, M.J. Grant Number(s): TP/08/98 Title: A Herpetological Survey of Tivoli Bays and Stockport Flats Year: 1999 Organization: Univ. of Southwestern Louisiana Pages: 12 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: The goals of this study were to provide baseline data on amphibian and reptile populatiosn at two Hudson River sites and to determine if more detailed studies will be necessary to assess these populations.
Zeisel, W.N.	025/85B/037	Education	Publication, video, etc.	Inst. for Rsch. in History	Entire Estuary	1.988	A History of Recreational Angling on the Hudson River	Author(s): Zeisel, W.N. Grant Number(s): 025/85B/037 Title: A History of Recreational Angling on the Hudson River Year: 1988 Organization: Inst. for Rsch. in History Pages: 310 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Education, Publication, video, etc. Subject: Summary: An extensive history of fishing on the Hudson River.
Retsch, W. C.						1.975	A Legislative and Management Plan for the Recreational and Commercial Striped Bass Fisheries of New York State	Author(s): Retsch, W. C. Grant Number(s): Title: A Legislative and Management Plan for the Recreational and Commercial Striped Bass Fisheries of New York State Year: 1975 Organization: Pages: 128 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: An MS thesis describing the development of a striped bass management plan for New York State based on scientific management principles.
Keene, C.I.	010/90A/027	Education	Curation & Exhibition	Hudson Highlands Nature Mus	Freshwater Tidal	1.991	A Living Exhibit Titled "The Hudson River: A Biological Filter at Work"	Author(s): Keene, C.I. Grant Number(s): 010/90A/027 Title: A Living Exhibit Titled "The Hudson River: A Biological Filter at Work" Year: 1991 Organization: Hudson Highlands Nature Mus Pages: 20 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Education, Curation & Exhibition Subject: Summary: Report on this exhibit at the Museum of the Hudson Highlands.
Bethoney, C.M.	009/88A/024	Toxic Substances	PCBs	NYS Department of Health	Upper Hudson River	1.993	A Long-Term Study of Anaerobic Dechlorination of PCB Congeners By Sediment Microorganisms: pathways and Mass Balance	Author(s): Bethoney, C.M., Bush, B., Rhee, G-Y., Sokol, R.C. Grant Number(s): 009/88A/024, 006/94P Title: A Long-Term Study of Anaerobic Dechlorination of PCB Congeners By Sediment Microorganisms: pathways and Mass Balance Year: 1993 Organization: NYS Department of Health Pages: Publication: HRF, peer review piece River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: Reductive dechlorination of PCBs by Hudson River sediment microorganisms was investigated using individual congeners, 2,3,4,2',4',5'-, 2,4,5,2,2,4,5'-, 2,3,4,5,6-, 2,4,2',4-, and 3,4,3',4'-, chlorobiphenyls (CBPs) in long-term studies lasting 15 months.
Kiviat, E.	TP/07/95	Resource/Key Species	Reptiles & Amphibians	Bard College	Freshwater Tidal	1.996	A Low Density, Tidal Marsh, Painted Turtle Population	Author(s): Kiviat, E., Rozycki, C. Grant Number(s): TP/07/95 Title: A Low Density, Tidal Marsh, Painted Turtle Population Year: 1996 Organization: Bard College Pages: 14 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: This project studied a population of the painted turtle (Chrysemys picta) in Tivoli North Day and compared the data collected to to results from the early 1970s.
de Angelis, M.A.	017/90A/048	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Entire Estuary	1.991	A Methane Budget for the Hudson River and Estuary	Author(s): de Angelis, M.A. , Scranton, M.I. Grant Number(s): 017/90A/048 Title: A Methane Budget for the Hudson River and Estuary Year: 1991 Organization: SUNY at Stony Brook Pages: 85 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Methane distributions and CH4 oxidation rates were surveyed throughout the Hudson River Estuary in March and August of 1991.
Caraco, N.F.	002/93A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	2.001	A method for the measurement of particulate C and P on the same filtered sample	Author(s): Caraco, N.F., Cole, J.J., Lampman, G.G. Grant Number(s): 002/93A Title: A method for the measurement of particulate C and P on the same filtered sample Year: 2001 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: There is substantial interest in measuring C:P ratios in aquatic systems because these particulate ratios may influence food quality of phytoplankton to zooplankton grazers. In most analyses C is measured by dry combustion using a CN analyzer requiring that P be measured on a separate sample. We show for marine and freshwater phytoplankton cultures and naturally occurring seston that C can be measured by a variation of the same wet-persulfate digestion method frequently used for P analysis, allowing C and P to be measured on the same filter.
Lodge, J.M.	GF/02/96	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	SUNY at Stony Brook	Entire Estuary	1.997	A Model of Tributary Sediment Input to the Tidal Hudson River	Author(s): Lodge, J.M. Grant Number(s): GF/02/96 Title: A Model of Tributary Sediment Input to the Tidal Hudson River Year: 1997 Organization: SUNY at Stony Brook Pages: 143 p Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: Sediment input to the tidal portion of the Hudson was calculated using the Hydrologic Simulation Program Fortran.
Bergeron, C.M.	009/01A	Toxic Substances	Fate & Transport of Toxic Substances	University of Maryland	Lower Estuary	2.008	A modeling study on methylmercury bioaccumulation and its controlling factors	Author(s): Bergeron, C.M., Kim, E., Mason, R.P. Grant Number(s): 009/01A Title: A modeling study on methylmercury bioaccumulation and its controlling factors Year: 2008 Organization: University of Maryland Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The objectives of this study were: (1) to develop a methylmercury (MeHg) bioaccumulation model using data from STORM (high bottom Shear realistic water column Turbulence Resuspension Mesocosms) experiments; and (2) to use the model as a diagnostic tool to examine an effect of sediment resuspension and other important factors on MeHg bioaccumulation. Therewere four mesocosm experiments (1-4) conducted both in summer and fall. Tidal resuspension (4h on- and 2h off-cycles)was simulated using the STORMfacility at CBL, UMCES (Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science). The model results showed that changes in clam biomass had a great effect on phytoplankton and zooplankton biomass, and consequently MeHg accumulation. In addition, it appeared that sediment resuspension played a role in transferring the enhanced sediment MeHg into organisms inhabiting both water column and sediment.
Mount, S.J.	TP/06/09	Dynamics of Food Webs	Ecosystem Processes	Bard College	Entire Estuary	2.011	A Native Species, the American Eel (Anguilla rostrata), as a Biological Control for an Invasive Crayfish (Orconectes rusticus) in Tributaries to the Hudson River, NY	Author(s): Mount, S.J., O'Reilly, C.M. Grant Number(s): TP/06/09 Title: A Native Species, the American Eel (Anguilla rostrata), as a Biological Control for an Invasive Crayfish (Orconectes rusticus) in Tributaries to the Hudson River, NY Year: 2011 Organization: Bard College Pages: Publication: HRF, report River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Shelter competition laboratory experiments showed that eels outcompete native spinycheek crayfish (Orconectes limosus) of all sizes for shelter, and eels outcompete invasive rusty crayfish for shelter in most cases. These findings suggest that only larger eels may act as a native biological control for the invasive rusty crayfish.
Wen, B.	GF/03/14			Stevens Institute of Technology		2.009	A New Method for the Generation of Complete and Accurate Tidal Datums Using a Comprehensive Data-Assimilative Numerical Model	Author(s): Wen, B. Grant Number(s): GF/03/14 Title: A New Method for the Generation of Complete and Accurate Tidal Datums Using a Comprehensive Data-Assimilative Numerical Model Year: 2009 Organization: Stevens Institute of Technology Pages: 28 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: The objective of the project is to use a combination of 13 verified water level time series to perform data assimilation of tidal water levels into a numerical hydrodynamic model’s verify results, then calculate tidal datums surfaces for the entire tidal Hudson River domain from the Battery to the Troy dam. The result could be used to replace and expand the existing Vdatum surfaces for Hudson River Area. The combination of assimilation set and verification set of waterlevel time series will be tested to make the model work in an optimal way.
Butler, T.J.	005/98A	Dynamics of Food Webs	Ecosystem Processes	Cornell University	Lower Estuary	1.999	A Novel Approach for Estimating Ecosystem Production and Respiration in Estuaries: Application to the Oligohaline and Mesohaline Hudson River	Author(s): Butler, T.J., Howarth, R.W., Swaney, D.P. Grant Number(s): 005/98A Title: A Novel Approach for Estimating Ecosystem Production and Respiration in Estuaries: Application to the Oligohaline and Mesohaline Hudson River Year: 1999 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The measurement of ecosystem respiration by tracking dissolved oxygen levels is described.
Seyfried, Curtis						1.996	A Policy Review of the USEPA's "National Estuary Program"	Author(s): Seyfried, Curtis Grant Number(s): Title: A Policy Review of the USEPA's "National Estuary Program" Year: 1996 Organization: Pages: 125 p Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: A master's thesis reviewing and critiquing the federally mandated EPA "National Estuary Program" from a public policy stand point.
Chambers, R.M.	TP/01/97	Resource/Key Species	Reptiles & Amphibians	Fairfield University	Lower Estuary	1.998	A Population Study of Diamondback Terrapins of Piermont Marsh, Hudson River, NY	Author(s): Chambers, R.M., Simoes, J.C. Grant Number(s): TP/01/97 Title: A Population Study of Diamondback Terrapins of Piermont Marsh, Hudson River, NY Year: 1998 Organization: Fairfield University Pages: 16 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: This research investigated the size and structure of the population of diamondback terrapins inhabiting Piermont Marsh in Rockland County, New York.
						1.988	A Proposal to Conduct Research Related to the Conservation of Hudson River Fisheries	Author(s): Grant Number(s): Title: A Proposal to Conduct Research Related to the Conservation of Hudson River Fisheries Year: 1988 Organization: Pages: 129 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: Annotated bibliography of selected Hudson River fish Studies.
Padilla, M.	009/85A/039	Education	Education (General)	Inwood Heights Parks Alliance	Lower Estuary	1.986	A Proposal to Establish a Marine Science Education Field Station in Inwood-Hill Park, the Site of Manhattan's Only Salt Water Marsh	Author(s): Padilla, M. Grant Number(s): 009/85A/039 Title: A Proposal to Establish a Marine Science Education Field Station in Inwood-Hill Park, the Site of Manhattan's Only Salt Water Marsh Year: 1986 Organization: Inwood Heights Parks Alliance Pages: 8 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Education, Education (General) Subject: Summary: A report on the Marine Science Education Field Station in Inwood-Hill Park.
Marcus, R.S.	004/84X/4	Information Management	Information Management	MIT	Entire Estuary	1.986	A Public Access Information System for the Hudson River Foufndation	Author(s): Marcus, R.S. Grant Number(s): 004/84X/4, Title: A Public Access Information System for the Hudson River Foufndation Year: 1986 Organization: MIT Pages: 5.0 10010aMarcus, Richard S. 24512aA Public Access Publication: HRF, report River Segment: Entire Estuary Area of Interest: Information Management, Information Management Subject: Summary: A study of the needs and possibilities for a public access information system for the Hudson River Foundation.
Long, Jr., J.H.	TP/05/94	Resource/Key Species	Striped Bass	Vassar College	Watershed	1.995	A Rapid Increase in Water Temperature Alters the Swimming Performance of Striped Bass (Morone Saxatilis)	Author(s): Long, Jr., J.H., McHenry, M.J. Grant Number(s): TP/05/94 Title: A Rapid Increase in Water Temperature Alters the Swimming Performance of Striped Bass (Morone Saxatilis) Year: 1995 Organization: Vassar College Pages: 10 Publication: HRF, report River Segment: Watershed Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: This project tested the effects of rapid temperature increases on the swimming behavior and locomotor performance of striped bass.
Bossert, P.	020/85B/023	Resource/Key Species	Biological Communities	Constitution Marsh Audubon Ctr	Freshwater Tidal	1.991	A review of some physiological and evolutionary aspects of body size and bud size of Hydra	Author(s): Bossert, P., Gatto, M., Matessi, C., Slobodkin, L.B. Grant Number(s): 020/85B/023 Title: A review of some physiological and evolutionary aspects of body size and bud size of Hydra Year: 1991 Organization: Constitution Marsh Audubon Ctr Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: A review of various studies and evidence suggesting that larger green hydra having more difficulty controlling algal increase than smaller one.
Letts, C.	004/83A/24	Education	Education (General)	Westchester County	Entire Estuary	1.986	A River for All Seasons	Author(s): Letts, C. Grant Number(s): 004/83A/24 Title: A River for All Seasons Year: 1986 Organization: Westchester County Pages: 58 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Education, Education (General) Subject: Summary: An education program for Westchecter County about the Hudson River.
Rachlin, Joseph Wolfe						1.967	A Study Comparing the Effectiveness of Fish Tissue in Culture and Whole Animal Studies as a Means of Assaying the Effects of Aquatic Pollutants	Author(s): Rachlin, Joseph Wolfe Grant Number(s): Title: A Study Comparing the Effectiveness of Fish Tissue in Culture and Whole Animal Studies as a Means of Assaying the Effects of Aquatic Pollutants Year: 1967 Organization: Pages: 89 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: A PhD dissertation detailing a procedure for using animal cells rather than whole animals for bioassays. Results suggest that cell cultures are much more sensitive than whole animal assays.
Kiviat, E.	TP/06/14	Other		Hudsonia	Freshwater Tidal	2.014	A Study of Goldenclub on the Hudson river	Author(s): Kiviat, E., Les, J.C. Grant Number(s): TP/06/14 Title: A Study of Goldenclub on the Hudson river Year: 2014 Organization: Hudsonia Pages: 39 Publication: HRF, thesis River Segment: Freshwater Tidal Area of Interest: Other, Subject: Summary: The central goal of this study was the conservation assessment of goldenclub (Orontium aquaticum L.) in the Hudson River Estuary. It was hypothesized that factors including hydrodynamic stress, sediment disruption, competition from co-occurring species, and increased herbivory had caused a decline in goldenclub abundance and distribution. Survey results were compared to abundance and distribution data gathered between the 1930s and spring 2014. Results indicate that exposure to open river, and resulting increased exposure to hydrodynamic stress, may be having a negative impact on goldenclub abundance and stand health, with increased herbivory posing a potential threat to Hudson River goldenclub. These factors should continue to be monitored and taken into account if goldenclub is to be conserved in the Hudson River and potentially used in wetland restoration.
Burke, R.L.	TP/06/05	Resource/Key Species	Reptiles & Amphibians	Hofstra University	Lower Estuary	2.006	A Study of Temperature-Dependent Sex Determination in the Diamondback Terrapins of Jamaica Bay	Author(s): Burke, R.L., Widrig, A.L. Grant Number(s): TP/06/05 Title: A Study of Temperature-Dependent Sex Determination in the Diamondback Terrapins of Jamaica Bay Year: 2006 Organization: Hofstra University Pages: 22 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: Nesting ecology and temperature-dependent sex determination were studied in diamondback terrapins at the Jamaica Bay Wildlife Refuge.
McGlynn, C.A.	TP/08/99	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	Auburn University	Freshwater Tidal	2.000	A Study of the Effects of Invasive Plant Species on Small Mammals in Hudson River Freshwater Marshes	Author(s): McGlynn, C.A., Ostfeld, R.S. Grant Number(s): TP/08/99 Title: A Study of the Effects of Invasive Plant Species on Small Mammals in Hudson River Freshwater Marshes Year: 2000 Organization: Auburn University Pages: 11 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: To infer effects of invasive plant species on the ecosystem, this study compares select characteristics of one faunal community in habitats dominated by the indigenous narrowleaf cattail, Typha angustifolia to the characteristics of similar communities in habitats dominated by the common reed, Phragmites australis and purple loosestrife, Lythrum salicaria.
Dey, W.P.	016/83B/18	Toxic Substances	Effects of Toxic Substances	Ecological Analysts, Inc.	Lower Estuary	1.986	A Study of the Occurance of Liver Cancer in Atlantic Tomcod (Microgradus Tomcod) from the Hudson River Estuary	Author(s): Dey, W.P. Grant Number(s): 016/83B/18 Title: A Study of the Occurance of Liver Cancer in Atlantic Tomcod (Microgradus Tomcod) from the Hudson River Estuary Year: 1986 Organization: Ecological Analysts, Inc. Pages: 51 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: This report summarizes the results of a year-long epidemiological survey of hepatomas in Atlantic tomcod in the Hudson River estuary.
Belton, T.J.	001/83A/002	Toxic Substances	Effects of Toxic Substances	NJDEP	Lower Estuary	1.986	A Study of Toxic Hazards for Urban Subsistance and Recreational Fisherman	Author(s): Belton, T.J., Roundy, R. Grant Number(s): 001/83A/002 Title: A Study of Toxic Hazards for Urban Subsistance and Recreational Fisherman Year: 1986 Organization: NJDEP Pages: 48 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: A study of toxic hazards for urban subsistence and recreational fishermen.
Levinton, J.S.	TP/05/98	Resource/Key Species	Zebra Mussels	Columbia University	Entire Estuary	1.999	A Study on the Impact of Zebra mussel (Dreissena polymorpha) on the Recruitment of Benthic Macro-Invertebrates on Artificial Substrates in the Hudson River	Author(s): Levinton, J.S., Yi, E.J. Grant Number(s): TP/05/98 Title: A Study on the Impact of Zebra mussel (Dreissena polymorpha) on the Recruitment of Benthic Macro-Invertebrates on Artificial Substrates in the Hudson River Year: 1999 Organization: Columbia University Pages: 15 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: The goal of this study was to determine the abiotic and biotic zebra mussel influences on the abundance and diversity of benthic macro-invertebrates in the Hudson River, and to test the effect of zebra mussel density.
Fletcher, R.I.						1.984	A Survey and Analysis of Fish Conservation Devices for Water-Pumping Facilities Having High Volumetric Rates of Intake	Author(s): Fletcher, R.I. Grant Number(s): Title: A Survey and Analysis of Fish Conservation Devices for Water-Pumping Facilities Having High Volumetric Rates of Intake Year: 1984 Organization: Pages: 74 Publication: HRF, published by River Segment: Area of Interest: , Subject: Summary: An overview of various fish conservation devices installed at the intake screen of water pumping facilities. Appendices located in separate file.
Keene, C.I.	014/84A/30	Resource/Key Species	Birds	Hudson Highlands Nature Mus	Entire Estuary	1.985	A Survey of Bald Eagles, Peregrine Falcons and Osprey Along the Hudson River	Author(s): Keene, C.I. Grant Number(s): 014/84A/30 Title: A Survey of Bald Eagles, Peregrine Falcons and Osprey Along the Hudson River Year: 1985 Organization: Hudson Highlands Nature Mus Pages: 11 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Birds Subject: Summary: Regional information on distribution, abundance, population dynamics, ecological requirements, and responses to human disturbance.
Anderson, A.B.	TP/05/88	Resource/Key Species	Other Invertebrates	Simon's Rock of Bard College	Tributaries	1.989	A Survey of Larval and Juvenile Fish Populations in Water-Chestnut (Trapa natans) Beds in Tivoli South Bay, a Hudson River Tidal Marsh	Author(s): Anderson, A.B., Schmidt, R.E. Grant Number(s): TP/05/88 Title: A Survey of Larval and Juvenile Fish Populations in Water-Chestnut (Trapa natans) Beds in Tivoli South Bay, a Hudson River Tidal Marsh Year: 1989 Organization: Simon's Rock of Bard College Pages: 18 Publication: HRF, report River Segment: Tributaries Area of Interest: Resource/Key Species, Other Invertebrates Subject: Summary: Larval fish populations in the water-chestnut beds in Tivoli South Bay, Hudson River, New York were sampled with light traps and dip nets from early June through late July 1988. Sampling was designed to determine the relationship of Trapa natans to the larval fish community.
Barbour, S.	TP/03/85	Resource/Key Species	Other Invertebrates		Freshwater Tidal	1.986	A Survey of Lepidoptera in Tivoli North Bay (Hudson River Estuary)	Author(s): Barbour, S., Kiviat, E. Grant Number(s): TP/03/85 Title: A Survey of Lepidoptera in Tivoli North Bay (Hudson River Estuary) Year: 1986 Organization: Pages: 24 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Other Invertebrates Subject: Summary: Lepidoptera (butterflies and moths) were surveyed in Tivoli North Bay, a freshwater tidal wetland of the Hudson River in Dutchess County, southeastern New York State.
Williscroft, Robert G.						1.983	A System for Protecting SCUBA Divers from the Hazards of Contaminated Water	Author(s): Williscroft, Robert G. Grant Number(s): Title: A System for Protecting SCUBA Divers from the Hazards of Contaminated Water Year: 1983 Organization: Pages: 201 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: A PhD dissertation. Many divers in scientific and community support areas are often called upon to dive in water that poses a significant threat to their health and well being. The author attempts to provide a way to protect a SCUBA diver from the contamination hazards arising from diving in polluted waters.
Seebaugh, D.R.	TP/08/04	Toxic Substances	Fate & Transport of Toxic Substances	CUNY, College of Staten Island	Entire Estuary	2.005	Absorption of Dietary Cd by Grass Shrimp, Palaemonetes spp., Collected Along an Environmental Impact Gradient	Author(s): Seebaugh, D.R., Wallace, W.G. Grant Number(s): TP/08/04 Title: Absorption of Dietary Cd by Grass Shrimp, Palaemonetes spp., Collected Along an Environmental Impact Gradient Year: 2005 Organization: CUNY, College of Staten Island Pages: 34 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This study investigated the effects dietary metal absorption had on grass shrimp.
Baines, S.B.	008/00A	Resource/Key Species	Zebra Mussels	SUNY at Stony Brook	Freshwater Tidal	2.003	Absorption of dissolved organic substances and its importance to metabolic requirements of the zebra mussel, Dreissena polymorpha	Author(s): Baines, S.B., Cole, J.J., Fisher, N.S. Grant Number(s): 008/00A Title: Absorption of dissolved organic substances and its importance to metabolic requirements of the zebra mussel, Dreissena polymorpha Year: 2003 Organization: SUNY at Stony Brook Pages: 43 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: This study determined the uptake rate of several types of dissolved organic materials.
Conover, D.O.	GF/02/10	Resource/Key Species	Sturgeon	Stony Brook University	Lower Estuary	2.012	Abundance and distribution of Atlantic sturgeon (Acipenser oxyrinchus) within the Northwest Atlantic Ocean, determined from five fishery-independent surveys	Author(s): Conover, D.O., Dunton, K.J., Frisk, M.G., Jordaan, A., McKown, K.A. Grant Number(s): GF/02/10 Title: Abundance and distribution of Atlantic sturgeon (Acipenser oxyrinchus) within the Northwest Atlantic Ocean, determined from five fishery-independent surveys Year: 2012 Organization: Stony Brook University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: A lack of knowledge of how oceanic habitat is used by juvenile marine migrant Atlantic sturgeon (Acipenser oxyrinchus) is hindering conservation measures directed at restoring severely depleted populations. Identifying the spatial distribution of Atlantic sturgeon is necessary to identify critical habitat and appropriate management actions. We used five fishery-independent surveys to assess habitat use and movement of Atlantic sturgeon during their marine life stage. The size distribution ranged from 56 to 269 cm total length (mean=108 cm). Ninety-eight percent of all Atlantic sturgeon were smaller than 197 cm-a size that indicated the majority were immature. The pattern of habitat use revealed concentration areas and potential migration pathways used for northerly summer and southerly winter migrations. Atlantic sturgeon were largely confined to water depths less than 20 m and aggregations tended to occur at the mouths of large bays (Chesapeake and Delaware bays) or estuaries (Hudson and Kennebec rivers) during the fall and spring and to disperse throughout the Mid-Atlantic Bight during the winter. In most surveys depth, temperature, and salinity were significantly related to the distribution of Atlantic sturgeon. Knowledge of their habitat and movements can be used to devise spatially based conservation plans to minimize bycatch and to enhance population recovery.
Bunnell, D.	001/88B/004	Resource/Key Species	Black Bass	Cornell University	Freshwater Tidal	1.993	Abundance and Winter Distribution of Hudson River Black Bass	Author(s): Bunnell, D., Forney, J.L., Green, D.M., Landsberger, S.E. , Nack, S.B. Grant Number(s): 001/88B/004, 009/91A Title: Abundance and Winter Distribution of Hudson River Black Bass Year: 1993 Organization: Cornell University Pages: 49 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Black Bass Subject: Summary: Largemouth bass and smallmouth bass are actively sought by anglers in the Hudson River, but little is known regarding bass habitat requirements in the Hudson and other large tidal rivers, particularly in winter.
Bain, M.B.	GF/01/05	Resource/Key Species	Other Fish	Cornell University	Entire Estuary	2.008	Abundance exchange models of fish assemblages along the Hudson River Estuary Gradient, New York	Author(s): Bain, M.B., Singkran, N. Grant Number(s): GF/01/05 Title: Abundance exchange models of fish assemblages along the Hudson River Estuary Gradient, New York Year: 2008 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Other Fish Subject: Summary: The spatially explicit abundance exchange model (AEM) was built for four fish species: winter flounder (Pseudopleuronectes americanus), Atlantic silverside (Menidia menidia), eastern silvery minnow (Hybognathus regius), and striped bass (Morone saxatilis) along the Hudson River estuary gradient, New York. The fish and habitat data during 1974-1997 were used to develop and calibrate the AEM; and the fish data during 1998-2001 was used to validate the model. Preference indexes of fish species for dissolved oxygen, salinity, water temperature, and bottom substrates along the gradient were estimated; and these were used to compute habitat preference (HP) of the associated fish species. The species HP was a key variable in the AEM to quantify abundance and distribution patterns of the associated species along the gradient. The AEM could efficiently predict abundance and distribution patterns of all modeled species except striped bass. The model ability for predicting a local distribution range of a fish species with broad tolerance on changing environment like striped bass should be improved.
Findlay, S.E.G.	016/86B/005	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.989	Abundance, Composition, and Dynamics of the Invertebrate Fauna of a Tidal Freshwater Wetland	Author(s): Findlay, S.E.G., Schoeberl, K.L., Wagner, B. Grant Number(s): 016/86B/005 Title: Abundance, Composition, and Dynamics of the Invertebrate Fauna of a Tidal Freshwater Wetland Year: 1989 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The benthic and epiphytic faunas of Tivoli South Bay were studied during two summers. Species abundances and composition were measured.
Buckel, J.A.	006/91A	Resource/Key Species	Bluefish	SUNY at Stony Brook	Lower Estuary	1.994	Accelerating the Onset of Piscivory: Intersection of Predator and Prey Phenologies	Author(s): Buckel, J.A., Conover, D.O., Juanes, F. Grant Number(s): 006/91A Title: Accelerating the Onset of Piscivory: Intersection of Predator and Prey Phenologies Year: 1994 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Bluefish Subject: Summary: The hypothesis that bluefish gain a size advantage over their fish prey by being spawned earlier in the season at a warmer latitude was tested with lab and field studies.
Wallace, W.G.	GF/02/93	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	1.995	Acclimation and adaptation to pollutants: effects on metal trophic transfer	Author(s): Wallace, W.G. Grant Number(s): GF/02/93 Title: Acclimation and adaptation to pollutants: effects on metal trophic transfer Year: 1995 Organization: SUNY at Stony Brook Pages: 20 p Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: The uptake of and resistance to cadmium by an oligochaete and a shrimp are explored.
Wallace, W.G.	GF/02/93	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	1.995	Acclimation and adaptation to pollutants: effects on metal trophic transfer (Interim report)	Author(s): Wallace, W.G. Grant Number(s): GF/02/93 Title: Acclimation and adaptation to pollutants: effects on metal trophic transfer (Interim report) Year: 1995 Organization: SUNY at Stony Brook Pages: 20 p Publication: HRF, thesis River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: The uptake of and resistance to cadmium by an oligochaete and a shrimp are explored.
Califano, Richard J.						1.979	Accumulation and Elimination of Arochlor 1254 by Juvenile Striped Bass, Morone saxatilis (Waldbaum)	Author(s): Califano, Richard J. Grant Number(s): Title: Accumulation and Elimination of Arochlor 1254 by Juvenile Striped Bass, Morone saxatilis (Waldbaum) Year: 1979 Organization: Pages: 59 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: An MS thesis on the accumulation and elimination of PCB's from juvenile striped bass. Different types of river water were used, feeding studies and elimination rates are discussed.
Baker, J.E.	009/03A	Toxic Substances	PCBs	University of Maryland	Upper Hudson River	2.008	Accumulation and Maternal Transfer of Polychlorinated Biphenyls in Snapping Turtles of the Upper Hudson River, New York, USA	Author(s): Baker, J.E., Eisenreich, K.M., Kelly, S.M., Rowe, C.L. Grant Number(s): 009/03A Title: Accumulation and Maternal Transfer of Polychlorinated Biphenyls in Snapping Turtles of the Upper Hudson River, New York, USA Year: 2008 Organization: University of Maryland Pages: Publication: HRF, peer review piece River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: We conducted field studies over three years to assess body burdens and maternal transfer of polychlorinated biphenyls (PCBs) as well as indices of sexual dimorphism in snapping turtles (Chelydra serpentina) of the upper Hudson River (NY, USA.)
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.996	Accumulation and Retention of Metals in Mussels from Food and Water: A Comparison under Field and Laboratory Conditions	Author(s): Fisher, N.S., Fowler, S.W., Teyssie, J.L., Wang, W.X. Grant Number(s): 002/97A Title: Accumulation and Retention of Metals in Mussels from Food and Water: A Comparison under Field and Laboratory Conditions Year: 1996 Organization: SUNY at Stony Brook Pages: 3232-3242 Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This study used radiotracer methodologies to examine the bioaccumulation and efflux rates of six metals (Ag, Am, Cd, inorganic Co, organic Co, Pb, and Zn) in the mussel Mytilus galloprovincialis, in which the dissolved phase and ingested phytoplankton food were compared quantitatively as sources.
Califano, Richard J.						1.981	Accumulation and Tissue Distribution of Polychlorinated Biphenyls (PCBs) in Early Life Stages of the Striped Bass, Morone saxatilis	Author(s): Califano, Richard J. Grant Number(s): Title: Accumulation and Tissue Distribution of Polychlorinated Biphenyls (PCBs) in Early Life Stages of the Striped Bass, Morone saxatilis Year: 1981 Organization: Pages: 163 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: A PhD dissertation of fish larvae exposed to Aroclor 1254 in water and sorbed to suspended particles and sediments. Fish were placed in static systems for periods up to 48 hours, and accumulated wholebody PCB burdens within one hour. Accumulation rates were linear during the first 24 hours.
Gibbs, R.J.	003/92A	Toxic Substances	Fate & Transport of Toxic Substances	University of Delaware	Entire Estuary	1.998	Accumulation of Muds and Metals in the Hudson River Estuary Turbidity Maximum	Author(s): Gibbs, R.J., Menon, M.G., Phillips, A. Grant Number(s): 003/92A Title: Accumulation of Muds and Metals in the Hudson River Estuary Turbidity Maximum Year: 1998 Organization: University of Delaware Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The mechanisms for the concentrating of muds and metals in the estuarine turbidity maximum of the Hudson River were explored.
Breslin, V.T.	007/88A/016	Toxic Substances	Effects of Toxic Substances	Pace University	Lower Estuary	1.995	Accumulation of silver and lead in estuarine microzooplankton	Author(s): Breslin, V.T., Fisher, N.S., Levandowsky, M. Grant Number(s): 007/88A/016 Title: Accumulation of silver and lead in estuarine microzooplankton Year: 1995 Organization: Pace University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Accumulation of lead and silver was measured in estuarine microzooplankton using radioisotope methods.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.998	Accumulation of trace elements in marine copepod	Author(s): Fisher, N.S., Wang, W-X Grant Number(s): 002/97A Title: Accumulation of trace elements in marine copepod Year: 1998 Organization: SUNY at Stony Brook Pages: 10 Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This study measured assimilation efficiencies from ingested algal food, uptake rates from the dissolved phase, and efflux rate constants of five elements in the marine copepod Termora longicornis.
Conover, D.O.	004/95A	Resource/Key Species	Striped Bass	SUNY at Stony Brook	Lower Estuary	2.001	Activity-related Constraints on Overwintering Young-of-the-Year Striped Bass (Morone saxatilis)	Author(s): Conover, D.O., Hurst, T.P. Grant Number(s): 004/95A Title: Activity-related Constraints on Overwintering Young-of-the-Year Striped Bass (Morone saxatilis) Year: 2001 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: The energetic costs of swimming under different flow conditions for young-of-the-year striped bass were measured.
Klerks, P.L.M.	008/86A/033	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	1.987	Adaptation to Metals in Benthic Macrofauna	Author(s): Klerks, P.L.M. Grant Number(s): 008/86A/033 Title: Adaptation to Metals in Benthic Macrofauna Year: 1987 Organization: SUNY at Stony Brook Pages: 143 Publication: HRF, thesis River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: A PhD dissertation describing adaptation of benthic invertebrates to metals polluting the benthos in Foundry Cove, Hudson River, New York.
Cleland, J.	003/94P	Toxic Substances	PCBs	Scenic Hudson, Inc.	Upper Hudson River	1.997	Advances in Dredging Contaminated Sediment: New Technologies and Experience Relevant to the Hudson River PCBs Site	Author(s): Cleland, J., Lee, C. Grant Number(s): 003/94P Title: Advances in Dredging Contaminated Sediment: New Technologies and Experience Relevant to the Hudson River PCBs Site Year: 1997 Organization: Scenic Hudson, Inc. Pages: 100 pp Publication: HRF, report River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: The most current environmental dredging technologies are reviewed in order to determine if any may be appropriate for use at the Hudson River PCB site.
Dueker, E.M.	007/13A	Toxic Substances	Pathogens	Queens College, CUNY	Lower Estuary	2.014	Aeration remediation of a polluted waterway increases near-surface coarse and culturable microbial aerosols	Author(s): Dueker, E.M., O'Mullan, G.D. Grant Number(s): 007/13A Title: Aeration remediation of a polluted waterway increases near-surface coarse and culturable microbial aerosols Year: 2014 Organization: Queens College, CUNY Pages: 7 Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Pathogens Subject: Summary: This study, conducted at the Newtown Creek superfund site in Brooklyn, NY, USA, measured coarse aerosol particles and culturable bacteria in near-surface air above waters undergoing aeration remediation.
Secor, D.H.	006/93A	Resource/Key Species	Sturgeon	University of Maryland	Entire Estuary	1.999	Age determination and growth of Hudson River Atlantic sturgeon, Acipenser oxyrinchus	Author(s): Secor, D.H., Stevenson, J.T. Grant Number(s): 006/93A Title: Age determination and growth of Hudson River Atlantic sturgeon, Acipenser oxyrinchus Year: 1999 Organization: University of Maryland Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: Pectoral-fin spine sections and sagittal otolith sections were examined to determine whether one of these structures would be useful in estimating the age and growth of Atlantic sturgeon.
Houde, E.D.	006/93A	Resource/Key Species	Sturgeon	University of Maryland	Entire Estuary	1.997	Age Structure and Life History Attributes of Atlantic Sturgeon (Acipenser oxyrinchus) in the Hudson River: Final Report	Author(s): Houde, E.D., Secor, D.H., Stevenson, J.T. Grant Number(s): 006/93A Title: Age Structure and Life History Attributes of Atlantic Sturgeon (Acipenser oxyrinchus) in the Hudson River: Final Report Year: 1997 Organization: University of Maryland Pages: 205 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: A comprehensive study of life history attributes of Atlantic sturgeon in the Hudson River
Houde, E.D.	004/92A	Resource/Key Species	Striped Bass	University of Maryland	Entire Estuary	1.994	Age- and Sex-Dependent Migrations of Hudson River Anadromous Striped Bass Population	Author(s): Houde, E.D., Secor, D.H. Grant Number(s): 004/92A Title: Age- and Sex-Dependent Migrations of Hudson River Anadromous Striped Bass Population Year: 1994 Organization: University of Maryland Pages: 57 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: Final report of grant # 004-92A; patterns of striped bass migration in the Hudson River are described for various age classes and both sexes.
Piccoli, P.M.	004/92A	Resource/Key Species	Striped Bass	University of Maryland	Entire Estuary	1.996	Age- and sex-dependent migrations of striped bass in the Hudson River as determined by chemical microanalysis of otoliths	Author(s): Piccoli, P.M., Secor, D.H. Grant Number(s): 004/92A Title: Age- and sex-dependent migrations of striped bass in the Hudson River as determined by chemical microanalysis of otoliths Year: 1996 Organization: University of Maryland Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: Patterns of habitat utilization and migration of Hudson River striped bass, Morone saxatilis, were estimated using otolith microchemical analysis to chart age- and sex-dependent movement.
Knowles, S.C.	014/95A	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	University of North Carolina	Lower Estuary	1.999	Aggregation and Settling of Fine-Grained Suspended Sediment	Author(s): Knowles, S.C. Grant Number(s): 014/95A Title: Aggregation and Settling of Fine-Grained Suspended Sediment Year: 1999 Organization: University of North Carolina Pages: 230 p Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: A PhD dissertation on the dynamics of fine-grained sediment transport in several US sites and the Elbe River, Germany
Gigliotti, C.L.	001/97A	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Lower Estuary	2.000	Air-water exchange of polycyclic aromatic hydrocarbons in the New York-New Jersey, USA, harbor estuary	Author(s): Gigliotti, C.L. Grant Number(s): 001/97A Title: Air-water exchange of polycyclic aromatic hydrocarbons in the New York-New Jersey, USA, harbor estuary Year: 2000 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: PAHs were measured in the gas and particle phases in the atmosphere and the dissolved and particle phases in the waters of the NY-NJ harbor estuary during a week long intensive field campaign.
Lake, T.R.	011/98A	Resource/Key Species	River Herring	Hudsonia Limited	Watershed	1.999	Alewives in Hudson River Tributaries	Author(s): Lake, T.R., Schmidt, R.E. Grant Number(s): 011/98A Title: Alewives in Hudson River Tributaries Year: 1999 Organization: Hudsonia Limited Pages: 25 pp Publication: HRF, report River Segment: Watershed Area of Interest: Resource/Key Species, River Herring Subject: Summary: Basic ecological information about alewives spawning in Hudson River tributaries was recorded, including sex ratio, fecundity, and sizes.
Lake, T.R.	016/99A	Resource/Key Species	River Herring	Hudsonia Limited	Watershed	2.000	Alewives in the Hudson Tributaries, two years of sampling	Author(s): Lake, T.R., Schmidt, R.E. Grant Number(s): 016/99A Title: Alewives in the Hudson Tributaries, two years of sampling Year: 2000 Organization: Hudsonia Limited Pages: 37 Publication: HRF, report River Segment: Watershed Area of Interest: Resource/Key Species, River Herring Subject: Summary: Documentation of alewife runs in 18 tributaries for the first time.
Strayer, D.L.	009/05A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Entire Estuary	2.010	Alien species in fresh waters: ecological effects, interactions with other stressors, and prospects for the future	Author(s): Strayer, D.L. Grant Number(s): 009/05A Title: Alien species in fresh waters: ecological effects, interactions with other stressors, and prospects for the future Year: 2010 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Because disturbance is generally thought to favour invasions, stressed ecosystems may be especially susceptible to invasions, as are highly artificial ecosystems. In turn, alien species can strongly alter the hydrology, biogeochemical cycling, and biotic composition of invaded ecosystems, and thus modulate the effects of other stressors. In general, interactions between alien species and other stressors are poorly studied.
Brownawell, B.J.	002/98A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Lower Estuary	2.002	Alkylphenol ethoxylate metabolites in the New York Harbor complex: an initial assessment of their distribution and effects	Author(s): Brownawell, B.J., Ferguson, P.L., Iden, C.R. Grant Number(s): 002/98A Title: Alkylphenol ethoxylate metabolites in the New York Harbor complex: an initial assessment of their distribution and effects Year: 2002 Organization: SUNY at Stony Brook Pages: 100 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Highly specified analytical approaches were developed based on HPLCc with electrospray mass spectrometry detection, for determining APEOs and their metabolites, in environmental matrixes such as wastewater, receiving waters, and sediments.
Elskus, A.A.	005/94P	Toxic Substances	PCBs	SUNY at Stony Brook	Lower Estuary	1.999	Altered CYP1A Expression in Fundulus heteroclitus adults and larvae: a sign of pollutant resistance?	Author(s): Elskus, A.A., McElroy, A.E., Monosson, E., Stegeman, J.J., Woltering, D.S. Grant Number(s): 005/94P Title: Altered CYP1A Expression in Fundulus heteroclitus adults and larvae: a sign of pollutant resistance? Year: 1999 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: This study addresses the development of resistance to CYP1A induction in a population of Fundulus heteroclitus from highly contaminated Newark Bay, NJ.
Howat, J.	017/85B/013	Education	Curation & Exhibition	Metropolitan Museum of Art	Entire Estuary	1.987	American Paradise: the world of the Hudson River School	Author(s): Howat, J. Grant Number(s): 017/85B/013 Title: American Paradise: the world of the Hudson River School Year: 1987 Organization: Metropolitan Museum of Art Pages: 347 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Education, Curation & Exhibition Subject: Summary: Catalogue of the exhibit of the Hudson River School of painters, shown during 1987-1988 at the Metropolitan Museum of Art.
Swift, B.L.	024/85B/031	Resource/Key Species	Birds	NYS Dept. of Env. Conservation	Freshwater Tidal	1.987	An Analysis of Avian Breeding Habitats in Hudson River Tidal Marshes	Author(s): Swift, B.L. Grant Number(s): 024/85B/031 Title: An Analysis of Avian Breeding Habitats in Hudson River Tidal Marshes Year: 1987 Organization: NYS Dept. of Env. Conservation Pages: 114 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Birds Subject: Summary: Research and data on migratory bird habitats associated with the Hudson River Estuary.
Baker, J.E.	009/03A	Toxic Substances	PCBs	University of Maryland	Upper Hudson River	2.007	An Analysis of Reproductive Ramifications of PCBs in Hudson River Snapping Turtles	Author(s): Baker, J.E., Mitchelmore, C.L., Rowe, C.L. Grant Number(s): 009/03A Title: An Analysis of Reproductive Ramifications of PCBs in Hudson River Snapping Turtles Year: 2007 Organization: University of Maryland Pages: 149 Publication: HRF, report River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: The project was intended to assess the potetial impacts on adult and juvenile turtles of PCBs that remain entrained in environmental matrices in the Upper Hudson River despte cessation of active inputs to the River several decades past.
Chambers, R.C.	TP/07/02	Resource/Key Species	Other Fish	Rutgers University	Entire Estuary	2.003	An Analysis of the Frequency and Duration of Spawning of Local Weakfish, Cynoscion regalis, Based on Age and Size Structure of Young-of-the-Year From the Hudson River, New York	Author(s): Chambers, R.C., Shrump, Jr., D.D. Grant Number(s): TP/07/02 Title: An Analysis of the Frequency and Duration of Spawning of Local Weakfish, Cynoscion regalis, Based on Age and Size Structure of Young-of-the-Year From the Hudson River, New York Year: 2003 Organization: Rutgers University Pages: 22 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Other Fish Subject: Summary: This study utilizes size and otolith-based ages of YOY weakfish to evaluate the frequency and duration of spawning.
Wirgin, I.I.	013/02A	Toxic Substances	PCBs	NYU School of Medicine	Upper Hudson River	2.011	An Assessment of Genetic Variation in PCB-Contaminated Mink from the Hudson	Author(s): Wirgin, I.I. Grant Number(s): 013/02A Title: An Assessment of Genetic Variation in PCB-Contaminated Mink from the Hudson Year: 2011 Organization: NYU School of Medicine Pages: Publication: HRF, report River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: We hypothesized that bioaccumulation of PCBs in Hudson River mink had reduced their levels of genetic diversity or altered their genetic population structure. To address this possibility, we conduced microsatellite DNA analysis at nine previously isolated loci on mink collected in close proximity to the Hudson River and from more distant locales.
Howarth, R.W.	005/94A	Dynamics of Food Webs	Ecosystem Processes	Cornell University	Freshwater Tidal	1.998	An Assessment of Human Influences on Fluxes of Nitrogen from the Terrestrial Landscape to the Estuaries and Continental Shelves of the North Atlantic Ocean	Author(s): Howarth, R.W. Grant Number(s): 005/94A Title: An Assessment of Human Influences on Fluxes of Nitrogen from the Terrestrial Landscape to the Estuaries and Continental Shelves of the North Atlantic Ocean Year: 1998 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Fluxes of nitrogen to coastal waters are related to human influences including agriculture and combustion.
Grossfield, J.	006/84A/74	Resource/Key Species	Striped Bass	The City College of CUNY	Entire Estuary	1.986	An Assessment of Population Dynamics of Striped Bass by Analysis of Mitochondrial DNA	Author(s): Grossfield, J., Silverstein, P., Wirgin, I.I. Grant Number(s): 006/84A/74 Title: An Assessment of Population Dynamics of Striped Bass by Analysis of Mitochondrial DNA Year: 1986 Organization: The City College of CUNY Pages: 45 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: A study of the population dynamics of Black Bass.
Chambers, R.C.	TP/06/01	Resource/Key Species	Other Fish	Richard Stockton College of NJ	Lower Estuary	2.002	An Assessment of Predation Risk of Juvenile Atlantic Tomcod, Microgadus tomcod, to Piscivorous Fishes of the Lower Hudson River	Author(s): Chambers, R.C., Witting, D.A., Zima, D. Grant Number(s): TP/06/01 Title: An Assessment of Predation Risk of Juvenile Atlantic Tomcod, Microgadus tomcod, to Piscivorous Fishes of the Lower Hudson River Year: 2002 Organization: Richard Stockton College of NJ Pages: 22 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Other Fish Subject: Summary: This study quantified the abundance of juvenile tomcod and their predators within the benthic trophic assmblage, estimated the frequency and size distribution of tomcod in the stomachs of predators, and evaluated the protential for size-biased and gape-limited predation on tomcod by predators.
Wong, K-C.						1.978	An Assessment of the Effects of Bathymetric Changes Associated with Sand and Gravel Mining on Tidal Circulation in the Lower Bay of the New York Harbor	Author(s): Wong, K-C. Grant Number(s): Title: An Assessment of the Effects of Bathymetric Changes Associated with Sand and Gravel Mining on Tidal Circulation in the Lower Bay of the New York Harbor Year: 1978 Organization: Pages: 52 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: An MS thesis on the effect of sand mining occurring in the Lower New York Harbor will have a negative impact on erosion control and water quality in other parts of the harbor.
Able, K.W.	001/96A	Resource/Key Species	Biological Communities	Rutgers University	Lower Estuary	1.999	An Assessment of the Feeding Success of Young-of-the-Year Winter Flounder (Pseudopleuronectes americanus) Near a Municipal Pier in the Hudson River Estuary, USA	Author(s): Able, K.W., Duffy-Anderson, J.T. Grant Number(s): 001/96A Title: An Assessment of the Feeding Success of Young-of-the-Year Winter Flounder (Pseudopleuronectes americanus) Near a Municipal Pier in the Hudson River Estuary, USA Year: 1999 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: Feeding success of winter flounder under piers and at pier edges was examined.
Erickson, J.D.	010/00A	Public Policy	Public Policy	Rensselaer Polytechnic Inst.	Watershed	2.005	An Ecological Economic Model for Integrated Scenario Analysis: Anticipating Change in the Hudson River Watershed	Author(s): Erickson, J.D., Gowdy, J.M., Hermans, C., Limburg, K.E., Nowosielski, A.A., Polimeni, J., Stainbrook, K.M. Grant Number(s): 010/00A, Title: An Ecological Economic Model for Integrated Scenario Analysis: Anticipating Change in the Hudson River Watershed Year: 2005 Organization: Rensselaer Polytechnic Inst. Pages: 341-370 Publication: HRF, manuscript River Segment: Watershed Area of Interest: Public Policy, Public Policy Subject: Summary: How the tyranny of small decisions in land use development has impacted the watershed communities of the Hudson River and Dutchess County. This project was to develop a model to predict land use changes and therefore, create more balance between economic and environmental goals.
Ginn, Thomas C.						1.977	An Ecological Investigation of Hudson River Macrozooplankton in the Vicinity of a Nuclear Power Plant	Author(s): Ginn, Thomas C. Grant Number(s): Title: An Ecological Investigation of Hudson River Macrozooplankton in the Vicinity of a Nuclear Power Plant Year: 1977 Organization: Pages: 272 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: A PhD dissertation conducted on selected Hudson River zooplankton species to determine temporal and spatial distributions and responses to power plant operation. Morphological and habitat characteristics were determined for three gammarid amphipods occurring in the Hudson River.
Oomen, J.	002/00A	Resource/Key Species	Reptiles & Amphibians	Hofstra University	Lower Estuary	2.002	An Ecological Study of the Diamondback Terrapin Population in Jamaica Bay	Author(s): Oomen, J. Grant Number(s): 002/00A Title: An Ecological Study of the Diamondback Terrapin Population in Jamaica Bay Year: 2002 Organization: Hofstra University Pages: 69 Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: Overview of the ecology of the Diamondback Terrapin with a special focus on the open water environment.
Rod, J.P.	020/85B/023	Resource/Key Species	Biological Communities	Constitution Marsh Audubon Ctr	Freshwater Tidal	1.990	An Ecological Study of the Muskrat in Constitution Marsh	Author(s): Rod, J.P. Grant Number(s): 020/85B/023 Title: An Ecological Study of the Muskrat in Constitution Marsh Year: 1990 Organization: Constitution Marsh Audubon Ctr Pages: 51 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: A study of the effect of cadmium contamination on muskrats in Constitution Marsh near the site of a battery factory at Foundry Cove.
Nolan, K.A.	TP/05/06	Resource/Key Species	Other Invertebrates	St. Francis College	Lower Estuary	2.007	An Estimate of Gene Flow in Hudson River and Jamaica Bay Grass Shrimp (Palaemonetes pugio) and Sand Shrimp (Crangon septemspinosa)	Author(s): Nolan, K.A., Phoolbosseea, M. Grant Number(s): TP/05/06 Title: An Estimate of Gene Flow in Hudson River and Jamaica Bay Grass Shrimp (Palaemonetes pugio) and Sand Shrimp (Crangon septemspinosa) Year: 2007 Organization: St. Francis College Pages: 10 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Other Invertebrates Subject: Summary: Genetic anaylsis was conducted on shrimp captured in the Hudson River and Jamaica Bay to examine gene flow between the two populations.
Courtenay, S.C.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	2.000	An Evaluation of the Etiology of Reduced CYP1A1 mRNA Expression in Atlantic Tomcod from the Hudson River Using RT-PCR Analysis	Author(s): Courtenay, S.C., Ikonomou, M., Maxwell, G., Roy, N.K., Wirgin, I.I., Yuan, Z. Grant Number(s): 011/94A Title: An Evaluation of the Etiology of Reduced CYP1A1 mRNA Expression in Atlantic Tomcod from the Hudson River Using RT-PCR Analysis Year: 2000 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: The investigators explored whether reduced inducibility of a gene in tomcod in the Hudson River is due to a genetic adaptation to exposure to contaminants or a physiological response.
Barse, A.M.	006/97A	Resource/Key Species	American Eel	University of Maryland	Entire Estuary	1.999	An Exotic Nematode Parasite of the American Eel	Author(s): Barse, A.M., Secor, D.H. Grant Number(s): 006/97A Title: An Exotic Nematode Parasite of the American Eel Year: 1999 Organization: University of Maryland Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, American Eel Subject: Summary: An exotic parasite found in American eels from the Chesapeake Bay and Hudson River is described.
Grosse, Daniel J.						1.982	An Experiment in the Artificial Rearing of Lingcod (Ophidion elongatus) for Purposes of Enhancement	Author(s): Grosse, Daniel J. Grant Number(s): Title: An Experiment in the Artificial Rearing of Lingcod (Ophidion elongatus) for Purposes of Enhancement Year: 1982 Organization: Pages: 92 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: An MS thesis on the aquaculture of lingcod in order to enhance the growth and survivability of juveniles, in order to restock depleted waters.
Levinton, J.S.	006/03A	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	2.007	An historic gain and loss of resistance pre-adapts a worm population to respond rapidly to selection with cadmium	Author(s): Levinton, J.S., Mackie, J.A. Grant Number(s): 006/03A Title: An historic gain and loss of resistance pre-adapts a worm population to respond rapidly to selection with cadmium Year: 2007 Organization: SUNY at Stony Brook Pages: 25 p Publication: HRF, manuscript River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: The population of the freshwater oligochaete Limnodrilus hoffmeisteri at Foundry Cove (FC, Hudson River, USA) evolved resistance to cadmium wastes. The FC cadmium concentration was reduced by dreging in 1994. By applying artificial selection to FC-origin lines and lines from a reference site lacking a history of adaptation to cadmium, it was determined whether genetic variation for resistance survived despite the vulnerability of post-cleanup phenotypes to cadmium.
Clooney, III, T.F.	016/95A	Toxic Substances	PCBs	Manhattan College	Entire Estuary	1.999	An integrated model of organic chemical fate and bioaccumulation in the Hudson River Estuary	Author(s): Clooney, III, T.F., Damiani, D.R., Farley, K.J. , Thomann, R.V., Wands, J.R. Grant Number(s): 016/95A Title: An integrated model of organic chemical fate and bioaccumulation in the Hudson River Estuary Year: 1999 Organization: Manhattan College Pages: 170 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: Mathematical models were used to determine the temporal and spatial distributions of PCBs in water, sediments and fish in the Hudson River estuary.
Erickson, J.D.	010/00A	Public Policy	Public Policy	Rensselaer Polytechnic Inst.	Watershed		An Interdisciplinary Modeling Framework Assessing How Human Socio-Economic Activities on the Landscape Affect Stream Ecosystem Health	Author(s): Erickson, J.D., Gowdy, J.M., Hong, B., Limburg, K.E., Nowosielski, A.A., Polimeni, J.M., Stainbrook, K.M. Grant Number(s): 010/00A Title: An Interdisciplinary Modeling Framework Assessing How Human Socio-Economic Activities on the Landscape Affect Stream Ecosystem Health Year: Organization: Rensselaer Polytechnic Inst. Pages: 37 Publication: HRF, manuscript River Segment: Watershed Area of Interest: Public Policy, Public Policy Subject: Summary: They build an interdisicplinary model framework to assess human impacts on stream ecosystem health through 3 building blocks ; social and economic structures based on an accounting matrix; land use change and urban sprawl; stream ecosystem health using the National Water Quality Assessment.
Bethoney, C.M.	006/94P	Toxic Substances	PCBs	NYS Department of Health	Lower Estuary	1.996	An Investigation of Factors Limiting the Reductive Dechlorination of Polychlorinated Biphenyls	Author(s): Bethoney, C.M., Kwon, O-S., Liu, X., Rhee, G-Y., Sokol, R.C. Grant Number(s): 006/94P Title: An Investigation of Factors Limiting the Reductive Dechlorination of Polychlorinated Biphenyls Year: 1996 Organization: NYS Department of Health Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: A study to determine whether the apparent limitation of dechlorination of Aroclor 1248 is due to bioavailability of PCBs or an accumulation of metabolic products.
Brown, M.P.	009/88A/024	Toxic Substances	PCBs	NYS Department of Health	Upper Hudson River	1.989	Anaerobic biodegradation of polychlorinated biphenyls in Hudson River sediments and dredged sediments in clay encapsulation	Author(s): Brown, M.P., Bush, B., Kane, M.W., Rhee, G-Y., Shane, L. Grant Number(s): 009/88A/024, 006/94P Title: Anaerobic biodegradation of polychlorinated biphenyls in Hudson River sediments and dredged sediments in clay encapsulation Year: 1989 Organization: NYS Department of Health Pages: Publication: HRF, peer review piece River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: Anoxic Hudson River sediments and clay-encapsulated dredged sediments were investigated to determine whether anaerobic biodegradation of PCBs occurred.
Bethoney, C.M.	009/88A/024	Toxic Substances	PCBs	NYS Department of Health	Upper Hudson River	1.993	Anaerobic Dechlorination of Aroclor 1242 As Affected by Some Environmental Conditions	Author(s): Bethoney, C.M., Bush, B., DeNucci, A. , Oh, H.M., Rhee, G-Y., Sokol, R.C. Grant Number(s): 009/88A/024 Title: Anaerobic Dechlorination of Aroclor 1242 As Affected by Some Environmental Conditions Year: 1993 Organization: NYS Department of Health Pages: Publication: HRF, peer review piece River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: The effect of electron acceptors and biphenyl on reductive dechlorination was investigated using the commercial polychlorinated biphenyl mixture Aroclor 1242 and sediment microorganisms for the Hudson River.
Rhee, G-Y.	006/94P	Toxic Substances	PCBs	NYS Department of Health	Lower Estuary	1.998	Anaerobic Dechlorination of PCBs in the Tidal Estuary of the Hudson River -- A Comparison with the Upper Hudson	Author(s): Rhee, G-Y. Grant Number(s): 006/94P Title: Anaerobic Dechlorination of PCBs in the Tidal Estuary of the Hudson River -- A Comparison with the Upper Hudson Year: 1998 Organization: NYS Department of Health Pages: 4 p Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: A final report comparing anaerobic microbial degradation of PCBs in the upper Hudson to that in the lower Hudson
Haggblom, M.M.	014/89A/056	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Entire Estuary	1.994	Anaerobic Degradation of Halogenated Phenols by Sulfate-Reducing Consortia	Author(s): Haggblom, M.M., Young, L.Y. Grant Number(s): 014/89A/056 Title: Anaerobic Degradation of Halogenated Phenols by Sulfate-Reducing Consortia Year: 1994 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This paper discusses the contamination of marine and estuarine sediments by anthropogenic halogenated organic compounds such as pesticides, solvents and other industrial chemicals.
Capone, D.G.	014/83B/12	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.988	Anaerobic Metabolism of Bacterial Populations of Sediments From the Lower Hudson River Estuary	Author(s): Capone, D.G., Gilmore, C., Kerr, R.P., Kiene, R. Grant Number(s): 014/83B/12 Title: Anaerobic Metabolism of Bacterial Populations of Sediments From the Lower Hudson River Estuary Year: 1988 Organization: SUNY at Stony Brook Pages: 28 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A paper on the subject stated in title.
Berman, M.H.	014/89A/056	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Entire Estuary	1.993	Anaerobic O-demethylation of Chlorinated Guaiacols by ACETOBACTERIUM WOODII and EUBACTERIUM LIMOSUM	Author(s): Berman, M.H. , Frazer, A.C. , Haggblom, M.M., Young, L.Y. Grant Number(s): 014/89A/056 Title: Anaerobic O-demethylation of Chlorinated Guaiacols by ACETOBACTERIUM WOODII and EUBACTERIUM LIMOSUM Year: 1993 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This is an examination of O-demethylation of chlorinated guaiacols (2-methoxyphenols).
Ferguson, P.L.	003/01A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	2.002	Analysis and fate of sewage-derived polar organic contaminants in the coastal marine environment	Author(s): Ferguson, P.L. Grant Number(s): 003/01A Title: Analysis and fate of sewage-derived polar organic contaminants in the coastal marine environment Year: 2002 Organization: SUNY at Stony Brook Pages: 255 Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Doctoral candidate develops highly specified analytical approaches, based on HPLC with electrospray mass spectrometry detection, for determining alkylphenol ethoxylate surfactants (APEOs) and their metabolites, as well as steroid estrogens, in environmental matrixes such as wastewater, receiving waters, and sediments.
Brownawell, B.J.	002/98A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Lower Estuary	2.000	Analysis of alkylphenol ehtoxylate metabolites in the aquatic environment using liquid chromatography-electrospray mass spectrometry	Author(s): Brownawell, B.J., Ferguson, P.L., Iden, C.R. Grant Number(s): 002/98A Title: Analysis of alkylphenol ehtoxylate metabolites in the aquatic environment using liquid chromatography-electrospray mass spectrometry Year: 2000 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: A quantitative method is described for the analysis of the metabolites of alkylphenol ethoxylate (APEO) surfactants in estuarine water and sediment samples using reversed-phase high-performance liquid chromatography with electrospray mass spectrometry detection.
Faber, B.	006/95A	Education	Education (General)	Liberty Science Center	Lower Estuary	1.998	Analysis of Estuary Trophic Systems (AETS) Final Report to the Hudson River Foundation	Author(s): Faber, B. Grant Number(s): 006/95A Title: Analysis of Estuary Trophic Systems (AETS) Final Report to the Hudson River Foundation Year: 1998 Organization: Liberty Science Center Pages: Approx. 25 p Publication: HRF, report River Segment: Lower Estuary Area of Interest: Education, Education (General) Subject: Summary: A summary and report of an educational program run at the Liberty Science Center is presented.
Baines, S.B.	004/87R/009	Resource/Key Species	Biological Communities	Cary Inst. Of Ecosystem Studies	Entire Estuary	1.992	Analysis of Hudson River Fish Populations from the Utilities Monitoring Program	Author(s): Baines, S.B., Cyr, H., Downing, J.A., Lalond, S., Pace, M.L. Grant Number(s): 004/87R/009 Title: Analysis of Hudson River Fish Populations from the Utilities Monitoring Program Year: 1992 Organization: Cary Inst. Of Ecosystem Studies Pages: 112 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: This report summarizes results from Hudson River Foundation grant 004\87R\009, "Hudson River Fish Populations: Analysis of Distribution and Abundance from Existing Data".
Brownawell, B.J.	002/98A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Lower Estuary	2.001	Analysis of nonylphenol and nonylphenol ethoxylates in environmental samples using high performance size-exclusion chromatography- electrospray mass spectrometry	Author(s): Brownawell, B.J., Ferguson, P.L., Iden, C.R. Grant Number(s): 002/98A Title: Analysis of nonylphenol and nonylphenol ethoxylates in environmental samples using high performance size-exclusion chromatography- electrospray mass spectrometry Year: 2001 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: A new method is described based on high performance size exclusion chromatography with electrospray mass spectrometry detection (HPSEC-ESI-MS) for comprehensive quantitative analysis of nonylphenol (NP) and nonylphenol ethoxylates (NPEO) in wastewater and sediment.
Levandowsky, M.	015/02A	Dynamics of Food Webs	Ecosystem Processes	Pace University	Lower Estuary	2.004	Analysis of phytoplankton data from two lower manhattan sites	Author(s): Levandowsky, M. Grant Number(s): 015/02A Title: Analysis of phytoplankton data from two lower manhattan sites Year: 2004 Organization: Pace University Pages: 40 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Two analyses of categorical data for phytoplankton taxa from weekly samples over an 8-year period are presented.
Arslan, Z.	013/98A	Resource/Key Species	American Eel	University of Maryland	Entire Estuary	2.006	Analysis of Trace Transition Elements and Heavy Metals in Fish Otoliths as Tracers of Habitat Use by American Eels in the Hudson River Estuary	Author(s): Arslan, Z., Secor, D.H. Grant Number(s): 013/98A Title: Analysis of Trace Transition Elements and Heavy Metals in Fish Otoliths as Tracers of Habitat Use by American Eels in the Hudson River Estuary Year: 2006 Organization: University of Maryland Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, American Eel Subject: Summary: Transition and heavy metals within the calcified otoliths of estuarine fishes may represent valuable tracers of environmental exposures, allowing inferences on natality, habitat use and exposure to pollution.
Longworth, B.E.	GF/04/03	Dynamics of Food Webs	Ecosystem Processes	University of Massachusetts	Entire Estuary	2.005	Ancient and Modern Sources of Organic Carbon to Tributaries of the Hudson-Mohawk River System, New York, USA	Author(s): Longworth, B.E. Grant Number(s): GF/04/03 Title: Ancient and Modern Sources of Organic Carbon to Tributaries of the Hudson-Mohawk River System, New York, USA Year: 2005 Organization: University of Massachusetts Pages: 102 Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Chapter one of this thesis reviews the role of rivers in global cycling. Chapter two describes the methods and results of a study of several upstate New York streams.
						1.994	Angling on a Changing Estuary	Author(s): Grant Number(s): Title: Angling on a Changing Estuary Year: 1994 Organization: Pages: 2 volumes: 1 = 285 p Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: A history of commercial and recreational fishing in the Harbor Estuary and its connection to other fishing areas on the east coast is presented.
						1.994	Angling on a Changing Estuary: The Hudson River, 1609-1995	Author(s): Grant Number(s): Title: Angling on a Changing Estuary: The Hudson River, 1609-1995 Year: 1994 Organization: Pages: 285 p Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: A history of commercial and recreational fishing in the Harbor Estuary and its connection to other fishing areas on the east coast is presented.
Limburg, K.E.	007/03A	Resource/Key Species	American Eel	SUNY College	Tributaries	2.008	Anguillicola crassus infection in Anguilla rostrata from small tributaries of the Hudson River watershed, New York, USA	Author(s): Limburg, K.E., Machut, L.S. Grant Number(s): 007/03A Title: Anguillicola crassus infection in Anguilla rostrata from small tributaries of the Hudson River watershed, New York, USA Year: 2008 Organization: SUNY College Pages: 28 Publication: HRF, manuscript River Segment: Tributaries Area of Interest: Resource/Key Species, American Eel Subject: Summary: This study tests the hypotheses that infection of American eel with the Anguillicola crassus parasite will be more prevalent in southern tributaries of the Hudson River watershed; that barriers would inhibit the upstream invasion of the parasite; that disturbances caused by urbanization would increase the infection of American eels; and, that eels infected with the parasite would show decreased health state when compared to uninfected eels.
Sokol, R.C.	018/84A/061	Dynamics of Food Webs	Ecosystem Processes	University at Albany	Entire Estuary	1.986	Annual germination window in oospores of Nitella furcate (Charophyceae)	Author(s): Sokol, R.C., Stross, R.G. Grant Number(s): 018/84A/061, 011/85A/057 Title: Annual germination window in oospores of Nitella furcate (Charophyceae) Year: 1986 Organization: University at Albany Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Oospores of Nitella furcata subspecies megacarpa were collected from an oospore bank in the sediments of Lake George, New York.
Limburg, K.E.	010/99A	Resource/Key Species	River Herring	SUNY at Syracuse	Watershed	1.998	Anomalous migrations of anadromous herrings revealed with natural chemical tracers	Author(s): Limburg, K.E. Grant Number(s): 010/99A Title: Anomalous migrations of anadromous herrings revealed with natural chemical tracers Year: 1998 Organization: SUNY at Syracuse Pages: Publication: HRF, peer review piece River Segment: Watershed Area of Interest: Resource/Key Species, River Herring Subject: Summary: Anadromous herrings of the genus Alosa are generally thought to leave their natal river or estuary at the end of the first growing season and return as mature adults to spawn. Nevertheless, immature yearling alosines have been observed in large numbers in the Hudson River estuary during and after the spring spawning run. I analyzed the stable isotopic (d13C, d15N) compositions of 26 blueback herring (Alosa aestivalis), eight American shad (Alosa sapidissima), and 10 alewife (Alosa pseudoharengus) collected from 55-225 km above the estuary mouth during April-July and compared them with isotopic compositions of young-of-year (resident) alosines, as well as adults (marine phase).
Slagle, A.L.	GF/02/05	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Lamont-Doherty Earth Observatory	Lower Estuary	2.007	Anthropogenic Activity Influences Sedimentary Environment and Variations in Sedimentation in the Lower Hudson River Estuary	Author(s): Slagle, A.L. Grant Number(s): GF/02/05 Title: Anthropogenic Activity Influences Sedimentary Environment and Variations in Sedimentation in the Lower Hudson River Estuary Year: 2007 Organization: Lamont-Doherty Earth Observatory Pages: 38 Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: Anthropogenic modifications to the shoreline and body of the lower Hudson River Estuary have been mapped and related to sedimentary environments and sedimentation patterns, by incorporation of historic maps with geophysical data and sediment samples.
Dittman, D.	007/03A	Resource/Key Species	American Eel	SUNY College	Tributaries	2.008	Anthropogenic Impacts on American Eel Demographics in Hudson River Tributaries, New York	Author(s): Dittman, D., Limburg, K.E., Machut, L.S., Schmidt, R.E. Grant Number(s): 007/03A Title: Anthropogenic Impacts on American Eel Demographics in Hudson River Tributaries, New York Year: 2008 Organization: SUNY College Pages: Publication: HRF, peer review piece River Segment: Tributaries Area of Interest: Resource/Key Species, American Eel Subject: Summary: An examination of the American eel population of Hudson River watershed tributaries revealed that tributary eel densities are higher than estimated, that natural and artificial barriers on tributaries reduce upstream eel population by at least a factor of 10, and that decreased eel condition correlates with increased riparian urbanization.
Corrigan, J.E.	TP/04/92	Other	Other	St. Francis College	Lower Estuary	1.993	Antibiotic Resistant Bacteria from New York Harbor	Author(s): Corrigan, J.E., Sala, M. Grant Number(s): TP/04/92 Title: Antibiotic Resistant Bacteria from New York Harbor Year: 1993 Organization: St. Francis College Pages: 25 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Other, Other Subject: Summary: This report summarizes the findings of tests done on water samples from thirteen sites in New York Harbor. From these sites, six isolated organisms were tested against a spectrum of 47 antimicrobial agents used in therapeutic dosages.
Juhl, A.	TP/08/10	Toxic Substances	Pathogens	Queens College	Lower Estuary	2.012	Antibiotic-resistant bacteria in the Hudson River Estuary linked to wet weather sewage contamination	Author(s): Juhl, A., O'Mullan, G.D., Young, S. Grant Number(s): TP/08/10 Title: Antibiotic-resistant bacteria in the Hudson River Estuary linked to wet weather sewage contamination Year: 2012 Organization: Queens College Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Pathogens Subject: Summary: Heterotrophic bacteria resistant to tetracycline and ampicillin were assessed in waterways of the New York City metropolitan area using culture-dependent approaches and 16S rRNA gene sequence analysis of resultant isolates. Resistant microbes were detected at all 10 sampling sites in monthly research cruises on the lower Hudson River Estuary (HRE), with highest concentrations detected at nearshore sites. Higher frequency sampling was conducted in Flushing Bay, to enumerate resistant microbes under both dry and wet weather conditions.
Strayer, D.L.	002/08A	Resource/Key Species	Zebra Mussels	Cary Inst. Of Ecosystem Studies	Entire Estuary	2.012	Anticipating the Imminent Invasion of the Chinese Mitten Crab into the Hudson River	Author(s): Strayer, D.L. Grant Number(s): 002/08A Title: Anticipating the Imminent Invasion of the Chinese Mitten Crab into the Hudson River Year: 2012 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: The purpose of this project was to gather pre-invasion information on the condition of Tivoli North Bay before the outbreak of the non-native Chinese mitten crab (Eriocheir sinensis) in the Hudson River. As of this writing, mitten crabs have not yet become abundant in the Hudson, and it is not known whether it will become abundant.
Fletcher, R.I.						1.984	Appendices to "A Survey and Analysis of Fish Conservation Devices for Water-Pumping Facilities Having High Volumetric Rates of Intake"	Author(s): Fletcher, R.I. Grant Number(s): Title: Appendices to "A Survey and Analysis of Fish Conservation Devices for Water-Pumping Facilities Having High Volumetric Rates of Intake" Year: 1984 Organization: Pages: 111 Publication: HRF, published by River Segment: Area of Interest: , Subject: Summary: An overview of various fish conservation devices installed at the intake screen of water pumping facilities.
Blasland, J.R.	009/83A/43	Toxic Substances	PCBs	Manhattan College	Entire Estuary	1.984	Application of a Food Chain Model of PCB Accumulation to the Striped Bass of the Hudson Estuary	Author(s): Blasland, J.R., Connolly, J.P., Winfield, R.P. Grant Number(s): 009/83A/43 Title: Application of a Food Chain Model of PCB Accumulation to the Striped Bass of the Hudson Estuary Year: 1984 Organization: Manhattan College Pages: 50 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: A analysis of PCB accumulation in Striped Bass.
Able, K.W.	001/13A	Resource/Key Species	Biological Communities	Rutgers University	Lower Estuary	2.014	Application of Mobile Dual-frequency Identification Sonar (DIDSON) to Fish in Estuarine Habitats	Author(s): Able, K.W., Buderman, F.E., Grothues, T.M., Rackovan, J.L. Grant Number(s): 001/13A Title: Application of Mobile Dual-frequency Identification Sonar (DIDSON) to Fish in Estuarine Habitats Year: 2014 Organization: Rutgers University Pages: 18 Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: Dual-frequency identification sonar (DIDSON) offers important advantages over other sampling tools for observing pelagic and benthic fishes in situ. Because it relies on sound, DIDSON can detect fish in a non-destructive and non-intrusive manner. In our unique application, the equipment’s small size and low power requirements allow deployment from a kayak for increased maneuverability in complex habitats. Characteristics that typify echograms of different fishes can be extracted using multivariate ordination techniques, such as principal components analysis (PCA), with in situ groundtruthing. Here we present reference images, techniques, and human-observer–error estimates from DIDSON application. Together, these approaches enhance our ability to sample fishes and even observe certain behaviors in complex, turbid environments during a full diel cycle.
Abrajano, T.A.	001/99A	Toxic Substances	Fate & Transport of Toxic Substances	Rensselaer Polytechnic Inst.	Entire Estuary	2.004	Apportioning PAH sources to sediments of the NY/NJ Harbor	Author(s): Abrajano, T.A., Bopp, R.F. Grant Number(s): 001/99A Title: Apportioning PAH sources to sediments of the NY/NJ Harbor Year: 2004 Organization: Rensselaer Polytechnic Inst. Pages: 25 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Documentation of the successful development of a new high temperature pyrolysis reactor technique that improved the hydrogen yield of conventional furnaces for compound-specific deltaD analysis of PAHs by 5 to 10 fold.
Bergman, R.F.	011/84A/4	Information Management	Information Management	Computer Corp. of America	Entire Estuary	1.985	Approach for the Development of a Scientific Database for the Hudson River Foundation	Author(s): Bergman, R.F., Goldman, M.F. Grant Number(s): 011/84A/4 Title: Approach for the Development of a Scientific Database for the Hudson River Foundation Year: 1985 Organization: Computer Corp. of America Pages: 55 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Information Management, Information Management Subject: Summary: The purpose of this grant was to develop an understanding of the kinds and amount of data resident in SAS format; formulate a definition of information requirements; perform a preliminary evaluation of DBMSs and statistical analysis packages that might be useful; and consider alternative high -level architectures for the implementation of a Scientific Database Information Management System.
Aga, D.S.	TP/04/07	Toxic Substances	Effects of Toxic Substances	SUNY Buffalo	Entire Estuary	2.008	Appyling an Effect-Directed Strategy to Identify Previously Unrecognized Toxic Chemicals in Hudson River Sediments	Author(s): Aga, D.S., Lupton, S.J., Wood, T.D. Grant Number(s): TP/04/07 Title: Appyling an Effect-Directed Strategy to Identify Previously Unrecognized Toxic Chemicals in Hudson River Sediments Year: 2008 Organization: SUNY Buffalo Pages: 26 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: An effect-directed strategy was developed to determine the presence of unrecognized toxics in Hudson River sediments or if biological responces are the result of mixtures of toxics.
Bannon-O'Donnell, E.	027/84B/28	Resource/Key Species	Biological Communities	Cary Inst. Of Ecosystem Studies	Watershed	1.988	Aquatic microannelids (Oligochaeta and Aphanoneura) of underground waters of Southeastern New York	Author(s): Bannon-O'Donnell, E., Strayer, D.L. Grant Number(s): 027/84B/28 Title: Aquatic microannelids (Oligochaeta and Aphanoneura) of underground waters of Southeastern New York Year: 1988 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Watershed Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: Investigation of oligochaetes and Aeolosoma in the hyporheic zone and other underground habitats.
Limburg, K.E.	009/95A	Resource/Key Species	Shad	Cary Inst. Of Ecosystem Studies	Entire Estuary	1.998	Are Spawners the First to Go? Retrospective Analysis of Early Migratory Histories of Adult American Shad Collected During the Spawning Run	Author(s): Limburg, K.E. Grant Number(s): 009/95A Title: Are Spawners the First to Go? Retrospective Analysis of Early Migratory Histories of Adult American Shad Collected During the Spawning Run Year: 1998 Organization: Cary Inst. Of Ecosystem Studies Pages: 45 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Shad Subject: Summary: The process of juvenile outmigration and ultimate recruitment to the spawning population were studied in American shad in the Hudson River.
Wadden, P.	013/88A/035	Education	Education (General)	Arm-of-the-Sea Productions	Freshwater Tidal	1.989	Arm-of-the-Sea: Hudson River Education Through Theater	Author(s): Wadden, P. Grant Number(s): 013/88A/035 Title: Arm-of-the-Sea: Hudson River Education Through Theater Year: 1989 Organization: Arm-of-the-Sea Productions Pages: 3 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Education, Education (General) Subject: Summary: A report on the activities of the Arm-of-the-Sea theater.
Ambrose, P.	013/93A	Resource/Key Species	Zebra Mussels	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.996	Arrival, Spread, and Early Dynamics of a Zebra Mussel (Dreissena polymorpha) Population in the Hudson River Estuary	Author(s): Ambrose, P., Fischer, D.T., Pace, M.L., Powell, J., Smith, L.C., Strayer, D.L. Grant Number(s): 013/93A Title: Arrival, Spread, and Early Dynamics of a Zebra Mussel (Dreissena polymorpha) Population in the Hudson River Estuary Year: 1996 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: The spread and effect of zebra mussels in the Hudson estuary is documented.
Montgomery, C.	TP/08/92	Resource/Key Species	Other Fish	Simon's Rock College of Bard	Freshwater Tidal	1.993	Aspects of Carp Biology in Tivoli South Bay, a Hudson River Tidal Freshwater Marsh	Author(s): Montgomery, C., Schmidt, R.E. Grant Number(s): TP/08/92 Title: Aspects of Carp Biology in Tivoli South Bay, a Hudson River Tidal Freshwater Marsh Year: 1993 Organization: Simon's Rock College of Bard Pages: 12 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Other Fish Subject: Summary: This study investigated the life history and feeding biology of adult carp (Cyprinus carpio) in Tivoli South Bay, a portion of the Hudson River National Estuarine Research Reserve, during the spawning season.
Williams, Kimberly Renee						2.002	Aspects of the biology of striped bass (Morone saxatilis) overwintering in the discharge of the LIPA power station, Northport, New York	Author(s): Williams, Kimberly Renee Grant Number(s): Title: Aspects of the biology of striped bass (Morone saxatilis) overwintering in the discharge of the LIPA power station, Northport, New York Year: 2002 Organization: Pages: 69 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: This study uses historical as well as current tagging data to provide clues necessary for understanding this "warm-water refuge phenomenon" and its relationship to the striped bass fishery at Northport, Long Island.
Niklitschek, E.J.	GF/05/98	Resource/Key Species	Sturgeon	University of Maryland	Entire Estuary	2.001	Assessing and modeling the energetic responses of sympatric sturgeons Acipenser oxyrinchus and A. brevirostrum to estuarine gradients in temperature, dissolved oxygen and salinity	Author(s): Niklitschek, E.J., Secor, D.H. Grant Number(s): GF/05/98 Title: Assessing and modeling the energetic responses of sympatric sturgeons Acipenser oxyrinchus and A. brevirostrum to estuarine gradients in temperature, dissolved oxygen and salinity Year: 2001 Organization: University of Maryland Pages: 85 Publication: HRF, manuscript River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: Focus on modeling the major effects and interactions of temperature, dissolved oxygen and salinity on fish metabolism and production.
Bauer, J.		Dynamics of Food Webs	Ecosystem Processes	The Ohio State University	Entire Estuary	2.016	Assessing Contributions of Aged Allochthonous Nutritional Subsidies to Macroinvertebrate Consumers in the Hudson and Susquehanna River Watersheds	Author(s): Bauer, J., Bellamy, A. Grant Number(s): Title: Assessing Contributions of Aged Allochthonous Nutritional Subsidies to Macroinvertebrate Consumers in the Hudson and Susquehanna River Watersheds Year: 2016 Organization: The Ohio State University Pages: 23 Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Graduate fellowship final report
Holtzman, N.	TP/08/14	Toxic Substances	Effects of Toxic Substances	Baruch College, CUNY	Lower Estuary	2.014	Assessing Developmental Consequences of an Environmentally Relevant PCB Mixture, Aroclor 1016, and Coplanar PCB126 on Shortnose and Atlantic Sturgeon Embryos and Larvae	Author(s): Holtzman, N., Singleman, C. Grant Number(s): TP/08/14 Title: Assessing Developmental Consequences of an Environmentally Relevant PCB Mixture, Aroclor 1016, and Coplanar PCB126 on Shortnose and Atlantic Sturgeon Embryos and Larvae Year: 2014 Organization: Baruch College, CUNY Pages: 27 Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: The Hudson River is teeming with life, and also with toxins. Over the course of 30 years General Electric released approximately 1.3 million pounds of PCB mixtures (Aroclors) into the HR resulting in lasting contamination. Shortnose and Atlantic sturgeon hearts exposed to PCB 126, TCDD and an Aroclor mixture showed unique cardiac deformities. PCB 126 caused hearts to not loop properly in early heart development, while TCDD and Aroclor treatments resulted in hearts with chambers that did not balloon. In both situations, the fish likely had problems with blood circulation and in most cases, treated fish died soon after hatching. These toxins have a clear impact on development and survival of sturgeon larvae and may hinder the budding recovery of these endangered species.
Limburg, K.E.	010/00A	Public Policy	Public Policy	Rensselaer Polytechnic Inst.	Watershed	2.006	Assessing Ecosystem Health in Dutchess County, New York	Author(s): Limburg, K.E., Stainbrook, K.M. Grant Number(s): 010/00A Title: Assessing Ecosystem Health in Dutchess County, New York Year: 2006 Organization: Rensselaer Polytechnic Inst. Pages: 30 Publication: HRF, manuscript River Segment: Watershed Area of Interest: Public Policy, Public Policy Subject: Summary: Chapter 6 of "Frontiers in Ecological Economic Theory and Application' by Jon Erickson and John Gowdy.
Kenna, T.C.	006/13A	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Lamont-Doherty Earth Observatory	Freshwater Tidal	2.018	Assessing Impact of Recent Storm Activity on Sediment Transport and Storage in the Hudson River	Author(s): Kenna, T.C., Nitsche, F.O. Grant Number(s): 006/13A Title: Assessing Impact of Recent Storm Activity on Sediment Transport and Storage in the Hudson River Year: 2018 Organization: Lamont-Doherty Earth Observatory Pages: 284 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: Using data from the Hudson River Benthic Mapping Program (1998-2004) as a baseline we used a combination of subbottom seismic surveys repeating pre-storm survey tracks, repeated bathymetry survey data, and 45 new sediment cores to determine the changes in seven selected areas of the Hudson River and the potential distribution of storm-related sediment input.
Limburg, K. E.	005/13A	Resource/Key Species	American Eel	SUNY Environmental Science & Forestry	Tributaries	2.017	Assessing Silver Eels in Hudson River Tributaries	Author(s): Limburg, K. E., Schmidt, R. E. Grant Number(s): 005/13A Title: Assessing Silver Eels in Hudson River Tributaries Year: 2017 Organization: SUNY Environmental Science & Forestry Pages: 8 Publication: HRF, report River Segment: Tributaries Area of Interest: Resource/Key Species, American Eel Subject: Summary: The goal of this project was to extend understanding of American eel (Anguilla rostrata) maturation processes, as well as further study of their use of Hudson River tributaries, including to understand and predict the transition of eels to the silver stage
Bauer, J.E.	GF/03/00	Dynamics of Food Webs	Ecosystem Processes	V.I.M.S.	Freshwater Tidal	2.004	Assessing Sources and Ages of Organic Matter Supporting River and Estuarine Bacterial Production: A Multiple-Isotope (14C, 13C and 15N) Approach	Author(s): Bauer, J.E., Cherrier, J.E., Ducklow, H.W., McCallister, S.L. Grant Number(s): GF/03/00 Title: Assessing Sources and Ages of Organic Matter Supporting River and Estuarine Bacterial Production: A Multiple-Isotope (14C, 13C and 15N) Approach Year: 2004 Organization: V.I.M.S. Pages: 1687-1702 Publication: HRF, thesis River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: This study used radiocarbon and stable isotopic signatures of bacterial nucleic acids to estimate the sources and ages of organic matter assimilated by bacteria in the Hudson River and York River estuary.
Bauer, J.E.	GF/03/00	Dynamics of Food Webs	Ecosystem Processes	V.I.M.S.	Freshwater Tidal	2.004	Assessing sources and ages of organic matter supporting river and estuarine bacterial production: A multiple-isotope (D14C, d13C, and d15N) approach	Author(s): Bauer, J.E., Cherrier, J.E., Ducklow, H.W., McCallister, S.L. Grant Number(s): GF/03/00 Title: Assessing sources and ages of organic matter supporting river and estuarine bacterial production: A multiple-isotope (D14C, d13C, and d15N) approach Year: 2004 Organization: V.I.M.S. Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: We used radiocarbon (D14C) and stable isotopic (d13C, d15N) signatures of bacterial nucleic acids to estimate the sources and ages of organic matter (OM) assimilated by bacteria in the Hudson River and York River estuary.
Budd, M.P.	TP/08/97	Other	Other	Bard College	Tributaries	1.998	Assessing the Effects of Land Use on Water Quality and Biotic Integrity in the Saw Kill (Red Hook, NY) Using Two Macroinvertebrate Indices and Chemical Data	Author(s): Budd, M.P., Strayer, D.L. Grant Number(s): TP/08/97 Title: Assessing the Effects of Land Use on Water Quality and Biotic Integrity in the Saw Kill (Red Hook, NY) Using Two Macroinvertebrate Indices and Chemical Data Year: 1998 Organization: Bard College Pages: 22 Publication: HRF, report River Segment: Tributaries Area of Interest: Other, Other Subject: Summary: This study used two biotic indices to calculate and compare with chemical data and correlate to land use that occurs in the Saw Kill watershed.
						1.997	Assessing the Functions of Hudson River Fresh-Tidal Marshes	Author(s): Grant Number(s): Title: Assessing the Functions of Hudson River Fresh-Tidal Marshes Year: 1997 Organization: Pages: 80 p Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: Using the Hydrogeomorphic Approach, a new, nationally developed approach for assessing wetland functions, Hudson River freshwater tidal marshes were assessed.
Sondheimer, C.	026/84B/24	Public Policy	Public Policy	Scenic Hudson, Inc.	Entire Estuary	1.986	Assessing the Impact of Development on Visual Resources of the Hudson River	Author(s): Sondheimer, C. Grant Number(s): 026/84B/24 Title: Assessing the Impact of Development on Visual Resources of the Hudson River Year: 1986 Organization: Scenic Hudson, Inc. Pages: 47 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: This handbook was written for elected officials, planning and zoning board members, community administrators, amd citizen groups and committees to help them deal with problems and issues affecting visual and scenic resources in their community.
Holtzman, N.	GF/04/15	Toxic Substances	Effects of Toxic Substances	Queens College, CUNY	Lower Estuary	2.016	Assessing the Mechanism of Impact of Hudson River Contaminants, PCB 126 and TCDD, on Cardiac Development in Atlantic Sturgeon and Zebrafish	Author(s): Holtzman, N., Singleman, C. Grant Number(s): GF/04/15 Title: Assessing the Mechanism of Impact of Hudson River Contaminants, PCB 126 and TCDD, on Cardiac Development in Atlantic Sturgeon and Zebrafish Year: 2016 Organization: Queens College, CUNY Pages: 19 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: This report suggests there is a new mechanism for PCB 126 and TCDD damage of the heart of zebrafish and Atlantic sturgeon which is unique from current mechanism theories.
Burckle, L.	010/01A	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Queens College of CUNY	Entire Estuary	2.007	Assessing the natural hazard for the lower hudson river region by estimating climate variability for the past 6,000 years	Author(s): Burckle, L., McHugh, C.M., Pekar, S.F. Grant Number(s): 010/01A Title: Assessing the natural hazard for the lower hudson river region by estimating climate variability for the past 6,000 years Year: 2007 Organization: Queens College of CUNY Pages: 8 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: Long-term climate variability of the Hudson River region based on climate reconstruction for the past 6,000 years was accomplished using four proxies to measure salinity: benthic foraminiferal biofacies, diatom assemblages, oxygen isotopes, and sedimentological evidence.
Gschwend, P.M.	006/01A	Toxic Substances	Fate & Transport of Toxic Substances	MIT	Lower Estuary	2.005	Assessing the Need to Clean Up Hudson River Estuary Sediments	Author(s): Gschwend, P.M. Grant Number(s): 006/01A Title: Assessing the Need to Clean Up Hudson River Estuary Sediments Year: 2005 Organization: MIT Pages: 10 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: In this project, Gschwend focused on: 1. the impact of combustion-derived black carbon on the sorption of hydrophobic organic pollutants such as PAHs and PCBs to estuarine sediments 2. the importance of sediment resuspension on the bed-to-water column exchanges of PAHs and PCBs in the Hudson estuary
Yan, B.	008/19A	Toxic Substances	Fate & Transport of Toxic Substances	Lamont-Doherty Earth Observatory	Lower Estuary	2.020	Assessing the sorption of pharmaceuticals to microplastics through in-situ experiments in New York City waterways	Author(s): Yan, B. Grant Number(s): 008/19A Title: Assessing the sorption of pharmaceuticals to microplastics through in-situ experiments in New York City waterways Year: 2020 Organization: Lamont-Doherty Earth Observatory Pages: 8 Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This paper reports the results of in-situ experiments to investigate the adsorption of pharmaceuticals (atenolol, sulfamethoxazole, and ibuprofen) on to eight types of test materials.
Garte, S.J.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	1.994	Assessment of Environmental Degradation by Molecular Analysis of a Sentinel Species: Atlantic Tomcod	Author(s): Garte, S.J., Wirgin, I.I. Grant Number(s): 011/94A Title: Assessment of Environmental Degradation by Molecular Analysis of a Sentinel Species: Atlantic Tomcod Year: 1994 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Molecular analysis of Epizootics of neoplasia in Hudson River tomcod after prolonged exposure to xenobiotics
Benson, W.	010/98A	Toxic Substances	Effects of Toxic Substances	Univ. of Mississippi	Lower Estuary	2.000	Assessment of environmental estrogens in the Hudson River drainage system	Author(s): Benson, W., Schlenk, D. Grant Number(s): 010/98A Title: Assessment of environmental estrogens in the Hudson River drainage system Year: 2000 Organization: Univ. of Mississippi Pages: 10 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Test hypothesis that sewage effluent contained endogenous estrogens and/or xenoestrogens at concentrations that disrupt endocrine and/or reproductive function in resident fish of the Hudson River.
Maltz, M.	TP/01/04	Resource/Key Species	Biological Communities	Iona College	Entire Estuary	2.005	Assessment of Genetic Variation in Phragmites australis Populations Along the Hudson River Using Inter Simple Sequence Repeat (ISSR) Analysis	Author(s): Maltz, M., Stabile, J. Grant Number(s): TP/01/04 Title: Assessment of Genetic Variation in Phragmites australis Populations Along the Hudson River Using Inter Simple Sequence Repeat (ISSR) Analysis Year: 2005 Organization: Iona College Pages: 17 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: ISSR analysis was used to examine populations of common reed to examine wetland disturbance.
Cerami, J.C.	001/94R	Dynamics of Food Webs	Ecosystem Processes	Coastal Env. Services, Inc.	Lower Estuary	1.996	Assessment of historical phytoplankton characteristics and bloom phenomena in the New York Harbor estuarine and New York Bight ecosystems	Author(s): Cerami, J.C., Cosper, E.M. Grant Number(s): 001/94R Title: Assessment of historical phytoplankton characteristics and bloom phenomena in the New York Harbor estuarine and New York Bight ecosystems Year: 1996 Organization: Coastal Env. Services, Inc. Pages: 10 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The purpose of this study is to compile existing data sets so as to characterize normal and excessive (blooms) phytoplankton conditions and to determine the location, extent, impacts and factors contributing to the blooms in water bodies of interest to the NY-NJ Harbor Estuary Program.
Alt, A.	002/02A	Dynamics of Food Webs	Ecosystem Processes	The River Project	Lower Estuary	2.006	Assessment of Population Levels, Biodiversity, and Design of Substrates that Maximize Colonization in NY Harbor: Experimental Study	Author(s): Alt, A., Drew, C., Levinton, J.S. Grant Number(s): 002/02A Title: Assessment of Population Levels, Biodiversity, and Design of Substrates that Maximize Colonization in NY Harbor: Experimental Study Year: 2006 Organization: The River Project Pages: 25 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Over two seasons in 2002 and 2003, they performed a colonization study of hard substrates at Pier 26, which faces the Hudson River in lower Manhattan. Using a stratified design their objective was to measure the biodiversity and amount of coverage of experimental colonization tiles.
Davidowich, D.M.	GF/01/97	Public Policy	Public Policy	NJ Institute of Technology	Lower Estuary	1.998	Assessment of Recreation Space Along the Hudson River Waterfront in Jersey City, NJ	Author(s): Davidowich, D.M. Grant Number(s): GF/01/97 Title: Assessment of Recreation Space Along the Hudson River Waterfront in Jersey City, NJ Year: 1998 Organization: NJ Institute of Technology Pages: 85 p Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: Waterfront use and recreational opportunities along the Jersey City waterfront are explored.
Lipus, D.	TP/04/11	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	Iona College	Entire Estuary	2.011	Assessment of Temporal and Geographic Population Structuring of Phragmites australis along the Hudson River using Microsatellite DNA Markers	Author(s): Lipus, D., Stabile, J., Wirgin, I. Grant Number(s): TP/04/11 Title: Assessment of Temporal and Geographic Population Structuring of Phragmites australis along the Hudson River using Microsatellite DNA Markers Year: 2011 Organization: Iona College Pages: 26 Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: Phragmites australis is a perennial grass that has been spreading significantly throughout wetlands of the Northeastern United States within the last 100 years. In this study, samples were collected from nine locations along the Hudson River and its surrounding areas. These, as well as samples collected in 2004 from the same locations, were analyzed for genetic variability using microsatellite primers for eight different loci. Results showed that populations growing in the northern regions of the Hudson River are genetically different from populations growing in the southern Hudson River regions.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.996	Assimilation and regeneration of trace elements by marine copepods	Author(s): Fisher, N.S., Lee, B.G., Reinfelder, J.R., Wang, W.X. Grant Number(s): 002/97A Title: Assimilation and regeneration of trace elements by marine copepods Year: 1996 Organization: SUNY at Stony Brook Pages: 70-81 Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Assimilation efficiencies of five trace elements (Am, Cd, Co, Se, and Zn) and carbon by neritic copepods (Acartia tonsa and Temora longicornis) feeding at different food concentrations and on different food types were measured with radiotracer techniques.
Seebaugh, D.R.	TP/06/07	Resource/Key Species	Other Invertebrates	CUNY Graduate Center	Entire Estuary	2.008	Assimilation and Subcellular Distribution of Dietary Hg by Grass Shrimp, Palaemonetes pugio, Collected Along an Environmental Impact Gradient	Author(s): Seebaugh, D.R., Wallace, W.G. Grant Number(s): TP/06/07 Title: Assimilation and Subcellular Distribution of Dietary Hg by Grass Shrimp, Palaemonetes pugio, Collected Along an Environmental Impact Gradient Year: 2008 Organization: CUNY Graduate Center Pages: 38 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Other Invertebrates Subject: Summary: This study investigated the assimilation of dietary Hg by grass shrimp collected along an environmental impact gradient in the NY/NJ Harbor.
Seebaugh, D.R.	TP/06/07	Resource/Key Species	Other Invertebrates	CUNY Graduate Center	Entire Estuary	2.009	Assimilation and subcellular partitioning of elements by grass shrimp collected along an impact gradient	Author(s): Seebaugh, D.R., Wallace, W.G. Grant Number(s): TP/06/07 Title: Assimilation and subcellular partitioning of elements by grass shrimp collected along an impact gradient Year: 2009 Organization: CUNY Graduate Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Other Invertebrates Subject: Summary: The present study investigated the assimilation of Cd, Hg and organic carbon by grass shrimp Palaemonetes pugio, collected along an impact gradient within the New York/New Jersey Harbor Estuary.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.997	Assimilation efficiencies and turnover rates of trace elements in marine bivalves: a comparison of oysters, clams and mussels	Author(s): Fisher, N.S., Luoma, S.N., Reinfelder, J.R., Wang, W.X. Grant Number(s): 002/97A Title: Assimilation efficiencies and turnover rates of trace elements in marine bivalves: a comparison of oysters, clams and mussels Year: 1997 Organization: SUNY at Stony Brook Pages: 443-452 Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Assimilation efficiencies and physiological turnover-rate constants of six trace elements (Ag, Am, Cd, Co, Se, Zn) in four marine bivalves were measured in radiotracer-depuration experiments.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.999	Assimilation efficiencies of chemical contaminants in aquatic invertebrates: a synthesis	Author(s): Fisher, N.S., Wang, W.-X. Grant Number(s): 002/97A Title: Assimilation efficiencies of chemical contaminants in aquatic invertebrates: a synthesis Year: 1999 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The various techniques used to measure contaminant assimilation are reviewed.
Fisher, N.	007/98A	Resource/Key Species	Zebra Mussels	SUNY at Stony Brook	Freshwater Tidal	2.002	Assimilation of micro- and mesozooplankton by zebra mussels: A demonstration of the food web link between zooplankton and benthic suspension feeders	Author(s): Fisher, N., Levinton, J.S., Twining, B.S., Wong, W.H. Grant Number(s): 007/98A Title: Assimilation of micro- and mesozooplankton by zebra mussels: A demonstration of the food web link between zooplankton and benthic suspension feeders Year: 2002 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: Tested the hypothesis that the microzooplankton are potential food source for zebra mussels.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.996	Assimilation of trace elements and carbon by the mussel Mytilus edulis: Effects of food composition	Author(s): Fisher, N.S., Wang, W.X. Grant Number(s): 002/97A Title: Assimilation of trace elements and carbon by the mussel Mytilus edulis: Effects of food composition Year: 1996 Organization: SUNY at Stony Brook Pages: 197-207 Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This study uses radiotracer techniques to examine the influence of diet on the assimilation of seven trace elements (Ag, Am, Cd, Co, Cr, Se, Zn) and C in the mussel Mytilus edulis.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.995	Assimilation of trace elements ingested by the mussel Mytilus edulis: effects of algal food abundance	Author(s): Fisher, N.S., Luoma, S.N., Wang, W.X. Grant Number(s): 002/97A Title: Assimilation of trace elements ingested by the mussel Mytilus edulis: effects of algal food abundance Year: 1995 Organization: SUNY at Stony Brook Pages: 165-176 Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Pulse-chase feeding and multi-labeled radiotracer techniques were employed to measure the assimilation of 6 trace elements (Ag, Am, Cd, Co, Se, and Zn) from ingested diatoms in the mussel Mytilus edulis feeding at different rates.
Able, K.W.	003/07A	Resource/Key Species	Biological Communities	Rutgers University	Lower Estuary	2.010	Association of Adult Fishes with Piers in th Lower Hudson River: Hydroacoustic Surveys for an Undersampled Resource	Author(s): Able, K.W., Grothues, T.M. Grant Number(s): 003/07A Title: Association of Adult Fishes with Piers in th Lower Hudson River: Hydroacoustic Surveys for an Undersampled Resource Year: 2010 Organization: Rutgers University Pages: 50 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: The development of new acoustic imaging technology (Dual Requency Identification Sonar, DIDSON) has made dark and turbid environments available to interpretation with acoustic videos. Subsequent census sampling occurred in the Hudson River under and around several piers along the Manhattan shoreline annually during 2007 - 2009.
Bain, M.B.	001/93A	Resource/Key Species	Sturgeon	Cornell University	Entire Estuary	1.997	Atlantic and Shortnose Sturgeons of the Hudson River: Common and Divergent Life History Attributes	Author(s): Bain, M.B. Grant Number(s): 001/93A Title: Atlantic and Shortnose Sturgeons of the Hudson River: Common and Divergent Life History Attributes Year: 1997 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: A review paper comparing life histories of shortnose and Atlantic sturgeons.
Arend, K.K.	001/93A	Resource/Key Species	Sturgeon	Cornell University	Entire Estuary	1.999	Atlantic Sturgeon Population Monitoring for the Hudson River Estuary: Sampling Design and Gear Recommendations	Author(s): Arend, K.K., Bain, M.B., Haley, N., Peterson, D.L. Grant Number(s): 001/93A Title: Atlantic Sturgeon Population Monitoring for the Hudson River Estuary: Sampling Design and Gear Recommendations Year: 1999 Organization: Cornell University Pages: 33 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: An analysis of protocols and equipment for monitoring sturgeon populations in the Hudson River. Gill netting was determined to be the preferred method for capturing young sturgeon.
Chambers, R.C.	013/01A	Toxic Substances	PCBs	NYU Medical Center	Lower Estuary	2.006	Atlantic Tomcod Microgadus tomcod: A Model Species for the Responses of Hudson River Fish to Toxicants	Author(s): Chambers, R.C., Wirgin, I.I. Grant Number(s): 013/01A Title: Atlantic Tomcod Microgadus tomcod: A Model Species for the Responses of Hudson River Fish to Toxicants Year: 2006 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: A series of toxicological studies on Atlantic tomcod Microgadus tomcod from the Hudson River Estuary have demonstrated profound and broad-based changes in response to local contaminants.
Dachs, J.	004/99A	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Lower Estuary	2.004	Atmospheric Concentrations and Deposition of Polychorinated Biphenyls to the Hudson River Estuary	Author(s): Dachs, J., Eisenreich, S.J., Gigliotti, C.L., Nelson, E.D., Offenberg, J.H., Reinfelder, J.R., Totten, L.A., van Ry, D.A. Grant Number(s): 004/99A Title: Atmospheric Concentrations and Deposition of Polychorinated Biphenyls to the Hudson River Estuary Year: 2004 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The first estimates of atmospheric deposition fluxes of polychlorinated biphenyls (PCBs) to the Hudson River Estuary are presented.
Hetling, L. J.	005/94A	Dynamics of Food Webs	Ecosystem Processes	Cornell University	Freshwater Tidal	1.997	Atmospheric Deposition of Nitrogen Oxides on the Landscape Contributes to Coastal Eutrophication in the Northeast United States	Author(s): Hetling, L. J., Howarth, R.W., Jaworski, N.A. Grant Number(s): 005/94A Title: Atmospheric Deposition of Nitrogen Oxides on the Landscape Contributes to Coastal Eutrophication in the Northeast United States Year: 1997 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Riverine export of nitrogen to coastal waters is related to atmospheric deposition and an inventory of emissions from combustion sources.
Eisenreich, S.J.	001/97A	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Lower Estuary	2.001	Atmospheric deposition of PCBs, PAHs, trace metals and nitrogen to the Hudson River estuary	Author(s): Eisenreich, S.J. Grant Number(s): 001/97A, 002/98R Title: Atmospheric deposition of PCBs, PAHs, trace metals and nitrogen to the Hudson River estuary Year: 2001 Organization: Rutgers University Pages: bfinal report plus appendices and suppliments 490 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: As part of the New Jersey Atmospheric Deposition Network, concentrations of PCBs and PAHs were measured at three sites near the estuary in air, aerosol, and precipitation at regular intervals from October 1997 through December 1999.
						2.007	Atmospheric Organic Carbon in the Hudson River and York River Watersheds: Quantities, Character, Sources and Fates	Author(s): Grant Number(s): Title: Atmospheric Organic Carbon in the Hudson River and York River Watersheds: Quantities, Character, Sources and Fates Year: 2007 Organization: Pages: 5 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary:
Wozniak, A.S.	GF/01/06	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	College of William and Mary	Lower Estuary	2.007	Atmospheric Organic Carbon in the Hudson River and York River Watersheds: Quantities, Character, Sources, and Fates	Author(s): Wozniak, A.S. Grant Number(s): GF/01/06 Title: Atmospheric Organic Carbon in the Hudson River and York River Watersheds: Quantities, Character, Sources, and Fates Year: 2007 Organization: College of William and Mary Pages: 6 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: Study measured mean atmospheric aerosol organic carbon in the Hudson River and York River watersheds and estimated percentage of the water soluble organic carbon component from aerosols. Fraction of samples originating from fossil fuel related activities was calculated.
Howarth, R.W.	005/92A	Dynamics of Food Webs	Ecosystem Processes	Cornell University	Freshwater Tidal	1.993	Atmospheric Oxygen Exchange in the Hudson River: Dome Measurements and Comparison with Other Natural Waters	Author(s): Howarth, R.W., Marino, R. Grant Number(s): 005/92A Title: Atmospheric Oxygen Exchange in the Hudson River: Dome Measurements and Comparison with Other Natural Waters Year: 1993 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: In order to measure free-water metabolic rates, estimates of atmospheric oxygen exchange are required. This exchange was measured using a dome technique in the Hudson River.
Brunciak, P.A.	004/99A	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Lower Estuary	2.000	Atmospheric Seasonal Trends and Environmental Fate of Alkylphenols in the Lower Hudson River Estuary	Author(s): Brunciak, P.A., Dachs, J., Eisenreich, S.J., Gigliotti, C.L., Nelson, E.D., van Ry, D.A. Grant Number(s): 004/99A Title: Atmospheric Seasonal Trends and Environmental Fate of Alkylphenols in the Lower Hudson River Estuary Year: 2000 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The atmospheric occurrence of nonylphenols and tertoctylphenol has been assessed at three sites in the lower Hudson River Estuary (LHRE).
Howe, D.V.	TP/06/00	Resource/Key Species	Striped Bass	University of Massachusetts	Entire Estuary	2.001	Availability, Consumption and Preference of Prey in Juvenile Striped Bass (Morone saxatilis) in the Hudson River	Author(s): Howe, D.V., Juanes, F. Grant Number(s): TP/06/00 Title: Availability, Consumption and Preference of Prey in Juvenile Striped Bass (Morone saxatilis) in the Hudson River Year: 2001 Organization: University of Massachusetts Pages: 24 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: This study investigated prey consumption of striped bass young-of-the-year and benthic macroinvertebrate abundances at three Hudson River locations on two dates.
Swift, B.L.	024/86B/020	Resource/Key Species	Birds	NYS Dept. of Env. Conservation	Freshwater Tidal	1.989	Avian breeding habitats in Hudson River tidal marshes	Author(s): Swift, B.L. Grant Number(s): 024/86B/020 Title: Avian breeding habitats in Hudson River tidal marshes Year: 1989 Organization: NYS Dept. of Env. Conservation Pages: 62 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Birds Subject: Summary: Purpose of this study was to generate substantial new data on migratory bird habitats associated with the Hudson River estuary.
Parson, R.H.	TP/03/96	Resource/Key Species	Zebra Mussels	Rensselaer Polytechnic Institute	Freshwater Tidal	1.997	Bacteria as a Direct Food Source for Zebra Mussels	Author(s): Parson, R.H., Vathanodorm, K. Grant Number(s): TP/03/96 Title: Bacteria as a Direct Food Source for Zebra Mussels Year: 1997 Organization: Rensselaer Polytechnic Institute Pages: 10 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: The ability of zebra mussels (Dreissena polymorpha) to use bacteria as a sole nutrient source was studied by examinign the changes in dry weight, lipid amount, and O2 uptake after starvation for three months and feeding for one month.
Ammermen, J. W.	001/87A/002	Dynamics of Food Webs	Ecosystem Processes	Columbia University	Lower Estuary	1.991	Bacterial 5'-nucleotidase activity in estuarine and coastal marine waters: Characterization of enzyme activity	Author(s): Ammermen, J. W. Grant Number(s): 001/87A/002 Title: Bacterial 5'-nucleotidase activity in estuarine and coastal marine waters: Characterization of enzyme activity Year: 1991 Organization: Columbia University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The goal of these studies was to determine whether microbial ectophosphatases make a significant contribution to phosphate regeneration in three estuarine and coastal marine ecosystems.
O'Connor, O.A.	GF/03/88	Toxic Substances	Fate & Transport of Toxic Substances	NYU Medical Center	Lower Estuary	1.992	Bacterial Metabolism of Aromatic Compounds and A Complex Hazardous Waste Under Anaerobic Conditions	Author(s): O'Connor, O.A. Grant Number(s): GF/03/88 Title: Bacterial Metabolism of Aromatic Compounds and A Complex Hazardous Waste Under Anaerobic Conditions Year: 1992 Organization: NYU Medical Center Pages: 404 p Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Two anaerobic bioassays, the biochemial Methane Potential and the Anaerobic Toxicity Assay were used to evaluate a series of phthalic acid esters, substituted phenols and a landfill leachate, for their methanogenic biodegradability and toxicity. These results demonstrated that many of the PAEs and phenols could be stoichiometrically mineralized, and that particular chemical features led to inhibited methanogenesis.
Findlay, S.E.G.	007/89A/017	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.991	Bacterial Metabolism of Organic Carbon in the Tidal Freshwater Hudson River	Author(s): Findlay, S.E.G., Howe, K., Lints, D., Pace, M.L. Grant Number(s): 007/89A/017 Title: Bacterial Metabolism of Organic Carbon in the Tidal Freshwater Hudson River Year: 1991 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A consideration of total carbon assimilation by planktonic bacteria in the Hudson and examination of the growth of bacteria on different carbon sources.
Cole, J.J.	003/86A/012	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.988	Bacterial Production in Fresh and Saltwater Ecosystems: a Cross-System Overview	Author(s): Cole, J.J., Findlay, S.E.G., Pace, M.L. Grant Number(s): 003/86A/012 Title: Bacterial Production in Fresh and Saltwater Ecosystems: a Cross-System Overview Year: 1988 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A paper based on data from 70 studies in which estimates of production of Heterotrophic bacterial biomass were reported for fresh and saltwater ecosystems.
Sanudo-Wilhelmy, S.A.	012/96A	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.999	Bacterioplankton Dynamics and Organic Carbon Partitioning in the Lower Hudson River Estuary	Author(s): Sanudo-Wilhelmy, S.A., Taylor, G.T. Grant Number(s): 012/96A Title: Bacterioplankton Dynamics and Organic Carbon Partitioning in the Lower Hudson River Estuary Year: 1999 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Surface water samples were collected and analyzed for organic carbon and bacterioplankton concentrations. The interactions between bacterioplankton and organic carbon are explored.
Akcakaya, H.R.	020/85B/023	Resource/Key Species	Biological Communities	Constitution Marsh Audubon Ctr	Freshwater Tidal	1.988	Balanced growth rates vs. Balanced Accelerations as Causes of Ecological Equilibria	Author(s): Akcakaya, H.R., Ginzburg, L.R., Slice, D., Slobodkin, L.B. Grant Number(s): 020/85B/023 Title: Balanced growth rates vs. Balanced Accelerations as Causes of Ecological Equilibria Year: 1988 Organization: Constitution Marsh Audubon Ctr Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: Experimental and literature data are presented in support of trophic equilibrium as a balance of causes influencing the acceleration of population size.
						1.994	Baseline Assessment of Tributaries to the Hudson (BATH): Water Quality, Fishes, Macroinvertebrates, and Diatoms in Fishkill Creek, Quassaic Creek, and Moodna Creek, Volume 1: Report	Author(s): Grant Number(s): Title: Baseline Assessment of Tributaries to the Hudson (BATH): Water Quality, Fishes, Macroinvertebrates, and Diatoms in Fishkill Creek, Quassaic Creek, and Moodna Creek, Volume 1: Report Year: 1994 Organization: Pages: 104 p Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: To assess the ecological condition of a number of Hudson tributaries, fish, macroinvertebrates, diatoms and water quality were sampled at 28 stations. The appendices list data collected in tables.
						1.994	Baseline Assessment of Tributaries to the Hudson (BATH): Water Quality, Fishes, Macroinvertebrates, and Diatoms in Fishkill Creek, Quassaic Creek, and Moodna Creek, Volume 2: Appendices	Author(s): Grant Number(s): Title: Baseline Assessment of Tributaries to the Hudson (BATH): Water Quality, Fishes, Macroinvertebrates, and Diatoms in Fishkill Creek, Quassaic Creek, and Moodna Creek, Volume 2: Appendices Year: 1994 Organization: Pages: 97 p Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: To assess the ecological condition of a number of Hudson tributaries, fish, macroinvertebrates, diatoms and water quality were sampled at 28 stations.
Hansen, W.	004/07A	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Worcester State College	Lower Estuary	2.011	Bathymetric Change Analysis of the Lower Passaic River	Author(s): Hansen, W. Grant Number(s): 004/07A Title: Bathymetric Change Analysis of the Lower Passaic River Year: 2011 Organization: Worcester State College Pages: 13 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: The cessation of dredging in the Lower Passaic offers a unique opportunity to observe changes in the hydrodynamics of an estuarine strait when anthropogenic alteration is halted. The current situation gives researchers the chance to examine the transformation of a depositional regime. These changes are an important consideration in both regulatory considerations and the potential for revitalizing the economic and recreational use of the Passaic River.
Geyer, W.R.	002/07A	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Woods Hole Oceanographic Inst.	Lower Estuary	2.012	Bathymetric controls on sediment transport in the Hudson River estuary: Lateral asymmetry and frontal trapping	Author(s): Geyer, W.R., Ralston, D.K., Warner, J.C. Grant Number(s): 002/07A Title: Bathymetric controls on sediment transport in the Hudson River estuary: Lateral asymmetry and frontal trapping Year: 2012 Organization: Woods Hole Oceanographic Inst. Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: Analyses of field observations and numerical model results have identified that sediment transport in the Hudson River estuary is laterally segregated between channel and shoals, features frontal trapping at multiple locations along the estuary, and varies significantly over the spring-neap tidal cycle. Lateral gradients in depth, and therefore baroclinic pressure gradient and stratification, control the lateral distribution of sediment transport.
Austin, K.H.	TP/04/86	Dynamics of Food Webs	Ecosystem Processes	University of Georgia	Entire Estuary	1.989	Benthic Bacterial Biomass and Production in the Hudson River Estuary	Author(s): Austin, K.H., Findlay, S.E.G. Grant Number(s): TP/04/86 Title: Benthic Bacterial Biomass and Production in the Hudson River Estuary Year: 1989 Organization: University of Georgia Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Bacterial biomass, production, and turnover were determined for two freshwater marsh sites and a site in the main river channel along the tidally influenced Hudson River.
Cochran, J.K.	005/91A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Lower Estuary	1.994	Benthic Contaminant Accumulation and Mixing Rate Studiesin the Hudson River Estuary	Author(s): Cochran, J.K., Hirschberg, D.J. Grant Number(s): 005/91A Title: Benthic Contaminant Accumulation and Mixing Rate Studiesin the Hudson River Estuary Year: 1994 Organization: SUNY at Stony Brook Pages: 64 p Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Sediment accumulation rates and their relation to contaminant accumulation were investigated using Thorium-234 methods.
Capone, D.G.	014/83B/12	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.988	Benthic Nitrogen Fixation	Author(s): Capone, D.G. Grant Number(s): 014/83B/12 Title: Benthic Nitrogen Fixation Year: 1988 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A paper on the subject stated in title.
Olsen, C.R.	GF/02/06	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Univ. of Massachusetts Boston	Freshwater Tidal	2.009	Beryllium-7 atmospheric deposition and sediment inventories in the Neponset River estuary, Massachusetts, USA	Author(s): Olsen, C.R., Zhu, J. Grant Number(s): GF/02/06 Title: Beryllium-7 atmospheric deposition and sediment inventories in the Neponset River estuary, Massachusetts, USA Year: 2009 Organization: Univ. of Massachusetts Boston Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: Measured monthly atmospheric depositional fluxes of cosmogenically produced 7Be ranged from 1 to 67 mBq/cm2 in Boston, MA between September 2000 and August 2007. These fluxes exhibited seasonality and supported a decay-corrected 7Be atmospheric depositional running inventory that ranged from 36 to 144 mBq/cm2. Annual 7Be deposition exhibited an increasing trend that may reflect a general decrease in solar activity and a general increase in precipitation over the 7-year sampling period. To investigate short-term sediment dynamics and accumulation patterns in the Neponset River estuary, we collected six sediment cores in July 2006 and measured 7Be sediment inventories ranging from 48 to 546 mBq/cm2 Comparisons of these sediment inventories with the 7Be running inventory from atmospheric deposition (101 mBq/cm2) at the time of core collection indicated a large degree of spatial heterogeneity in sediment accumulation patterns and its potential use as a tool for assessing the impacts of environmental restoration activities in estuarine environments.
Capriulo, G.M.	007/88A/016	Toxic Substances	Effects of Toxic Substances	Pace University	Lower Estuary	1.986	Bioaccumulation and Toxic Effects of Lead and Silver in Hudson River Microzooplankton	Author(s): Capriulo, G.M., Fisher, N.S., Levandowsky, M. Grant Number(s): 007/88A/016 Title: Bioaccumulation and Toxic Effects of Lead and Silver in Hudson River Microzooplankton Year: 1986 Organization: Pace University Pages: 36 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: A study of the toxic effects and bioaccumulation of lead and silver in Hudson River Microzooplankton.
Ahrens, M.	003/96A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Lower Estuary	1.999	Bioaccumulation of sediment-associated hydrophobic contaminants: biological and chemical factors controlling assimilation	Author(s): Ahrens, M., Brownawell, B.J., Lamoureux, E.M., Lopez, G.R., McElroy, A.E. Grant Number(s): 003/96A Title: Bioaccumulation of sediment-associated hydrophobic contaminants: biological and chemical factors controlling assimilation Year: 1999 Organization: SUNY at Stony Brook Pages: 106 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This project included a combination of controlled laboratory bioaccumulation, desorption and assimilation efficiency studies.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.999	Bioavailability of dissolved and sediment-bound metals to a marine deposit-feeding polychaete	Author(s): Fisher, N.S., Stupakoff, I., Wang, W.-X. Grant Number(s): 002/97A Title: Bioavailability of dissolved and sediment-bound metals to a marine deposit-feeding polychaete Year: 1999 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Assimiliation efficiencies of trace elements in a marine deposit-feeding polychaete, Nereis succunea, from ingested sediments were measured using a pulse-chase radiotracer feeding technique
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.998	Bioavailability of Inorganic and Methylmercury to a Marine Deposit-Feeding Polychaete	Author(s): Fisher, N.S., Gagnon, C., Stupakoff, I., Wang, W.-X. Grant Number(s): 002/97A Title: Bioavailability of Inorganic and Methylmercury to a Marine Deposit-Feeding Polychaete Year: 1998 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The assimilation efficiencies from various types of sediments and the uptake rate constants from the dissolved phase of inorganic mercury and methylmercury in a marine worm were measured.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	2.004	Bioavailability of Sediment-bound Metals to Marine Bivalve Molluscs: An Overview	Author(s): Fisher, N.S., Griscom, S.B. Grant Number(s): 002/97A Title: Bioavailability of Sediment-bound Metals to Marine Bivalve Molluscs: An Overview Year: 2004 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Using kinetic modeling, bivalve metal uptake through ingestion has been quantitatively compared with uptake through the dissolved phase.
Cho, Y.C.	017/00A	Toxic Substances	PCBs	NYS Department of Health	Freshwater Tidal	2.004	Bioconcentration and redeposition of polychlorinated biphenyls by zebra mussels (Dreissena polymorpha) in the Hudson River	Author(s): Cho, Y.C., Frohnhoefer, R.C., Rhee, G-Y. Grant Number(s): 017/00A Title: Bioconcentration and redeposition of polychlorinated biphenyls by zebra mussels (Dreissena polymorpha) in the Hudson River Year: 2004 Organization: NYS Department of Health Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Toxic Substances, PCBs Subject: Summary: The potential impact of zebra mussel infestation on PCB dynamics in the Hudson River was determined by investigating the biodeposition and bioconcentration of PCBs.
Hudsonia, Ltd.	007/93A	Resource/Key Species	Biological Communities	Hudsonia Limited	Watershed	2.001	Biodiversity assessment manual for the Hudson River estuary corridor	Author(s): Hudsonia, Ltd., Kiviat, E., Stevens, G. Grant Number(s): 007/93A Title: Biodiversity assessment manual for the Hudson River estuary corridor Year: 2001 Organization: Hudsonia Limited Pages: 508 Publication: HRF, report River Segment: Watershed Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: A manual designed to help local officials, environmental practitioners, developers and citizens identify, assess and protect habitats and species of special conservation importance in the towns and counties along the tidal Hudson River.
Coote, T.	009/07A	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	2.012	Biodiversity in Hudson River shore zones: influence of shoreline type and physical structure	Author(s): Coote, T., Findlay, S.E.G., Fischer, D.T., Malcolm, H.M., Miller, D., Strayer, D.L. Grant Number(s): 009/07A Title: Biodiversity in Hudson River shore zones: influence of shoreline type and physical structure Year: 2012 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: The shore zones of the Hudson River, like those of many developed waterways, are highly varied, containing a mix of seminatural and highly engineered shores. Our goal was to document the biodiversity supported by different kinds of shore zones in the Hudson.
Conover, D.O.	004/95A	Resource/Key Species	Striped Bass	SUNY at Stony Brook	Lower Estuary	2.000	Bioenergetics and habitat requirements of overwintering young-of-the-year striped bass: implications for recruitment	Author(s): Conover, D.O., Hurst, T.P. Grant Number(s): 004/95A Title: Bioenergetics and habitat requirements of overwintering young-of-the-year striped bass: implications for recruitment Year: 2000 Organization: SUNY at Stony Brook Pages: 148 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: Describes life history of Hudson River YOY striped bass as well as overwintering
Niklitschek, E.J.	GF/05/98	Resource/Key Species	Sturgeon	University of Maryland	Entire Estuary	2.001	Bioenergetics modeling and assessment of suitable habitat for juvenile Atlantic and shortnose sturgeons (Acipenser oxyrinchus and A. brevirostrum) in the Chesapeake Bay	Author(s): Niklitschek, E.J. Grant Number(s): GF/05/98 Title: Bioenergetics modeling and assessment of suitable habitat for juvenile Atlantic and shortnose sturgeons (Acipenser oxyrinchus and A. brevirostrum) in the Chesapeake Bay Year: 2001 Organization: University of Maryland Pages: 158 Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: Used juvenile Atlantic and shortnose sturgeons as experimental subjects to evaluate the effects of temperature, salinity and dissolved oxygen on fish bioenergetics and propose a multivariable bioenergetic modeling approach, which incorporates the effects and interactions from all three environmental factors.
Hammerschmidt, C.R.	GF/01/04	Toxic Substances	Fate & Transport of Toxic Substances	University of Connecticut	Lower Estuary	2.005	Biogeochemical cycling of methylmercury in New York/New Jersey Harbor estuary	Author(s): Hammerschmidt, C.R. Grant Number(s): GF/01/04 Title: Biogeochemical cycling of methylmercury in New York/New Jersey Harbor estuary Year: 2005 Organization: University of Connecticut Pages: 4 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The general goal of this research is to investigate the biogeochemical factors affecting the production, distribution, and mobilization of monomethylmercury from sediments in the NY/NJ Harbor estuary.
Aller, R.C.	003/01A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	2.003	Biogeochemistry of Nonylphenol Ethoxylates in Urban Estuarine Sediments	Author(s): Aller, R.C., Bopp, R.F., Brownawell, B.J., Chillrud, S.N., Ferguson, P.L. Grant Number(s): 003/01A Title: Biogeochemistry of Nonylphenol Ethoxylates in Urban Estuarine Sediments Year: 2003 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This study examines the concentrations and distributions of nonylphenol ethoxylate surfactants and their primary neutral metabolites in two dated sediment cores collected in 1988 and 1996 from a depositional area proximal to a wastewater treatment plant within Jamaica Bay, NY.
Carlton, J.T.	009/92A	Resource/Key Species	Zebra Mussels	Cornell University	Entire Estuary	1.994	Biological Invasions in the Hudson River: An Inventory and Historical Analysis (Final Report)	Author(s): Carlton, J.T., Mills, E.L., Scheuerell, M.D., Strayer, D.L. Grant Number(s): 009/92A Title: Biological Invasions in the Hudson River: An Inventory and Historical Analysis (Final Report) Year: 1994 Organization: Cornell University Pages: 78 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: An inventory of introduced and exotic species in the Hudson River basin.
Bustamante, H.	GF/01/07	Resource/Key Species	Zebra Mussels	University of Illinois	Lower Estuary	2.011	Biotic resistance on the increase: native predators structure invasive zebra mussel populations	Author(s): Bustamante, H., Carlsson, N.O.L., Pace, M.L., Strayer, D.L. Grant Number(s): GF/01/07 Title: Biotic resistance on the increase: native predators structure invasive zebra mussel populations Year: 2011 Organization: University of Illinois Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: Long-term data from the Hudson River suggest that components of the invaded ecosystem, like rotifers, are recovering through predator-caused release from zebra mussel grazing. Increased mortality on hyper-successful exotic populations over time may be a common phenomenon with both ecological and management implications.
Cho, Y.C.	005/97A	Toxic Substances	PCBs	NYS Department of Health	Upper Hudson River	2.000	Biotransformation of polychlorinated biphenyls in St. Lawrence River sediments: reductive dechlorination and dechlorinating microbial populations	Author(s): Cho, Y.C., Kim, J.S., Rhee, G-Y., Sokol, R.C. Grant Number(s): 005/97A Title: Biotransformation of polychlorinated biphenyls in St. Lawrence River sediments: reductive dechlorination and dechlorinating microbial populations Year: 2000 Organization: NYS Department of Health Pages: Publication: HRF, peer review piece River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: PCB dechlorinating microbial populations in St. Lawrence River sediments were fractionated and estimated based on the dechlorination pattern using a combination of serial dilution and most probable number techniques.
Chiotti, T.L.	009/91A	Resource/Key Species	Black Bass	Cornell University	Lower Estuary	1.995	Black bass movements after release from fishing tournaments in four New York waters	Author(s): Chiotti, T.L., Green, D.M., Klindt, R.M., Miller, W.W., Stang, D.L. Grant Number(s): 009/91A Title: Black bass movements after release from fishing tournaments in four New York waters Year: 1995 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Black Bass Subject: Summary: The effect of catch-and-release tournament fishing for largemouth and smallmouth bass were evaluated by tracking the movements of released fish with radio tags.
Stein, J.J.	TP/06/91	Resource/Key Species	Blue Crab	Central Connecticut State U.	Lower Estuary	1.992	Blue Crab (Callinectes sapidus) Distribution and Habitat Utilization in the Lower Hudson River and Tributaries	Author(s): Stein, J.J., Wilson, K.A. Grant Number(s): TP/06/91 Title: Blue Crab (Callinectes sapidus) Distribution and Habitat Utilization in the Lower Hudson River and Tributaries Year: 1992 Organization: Central Connecticut State U. Pages: 13 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Blue Crab Subject: Summary: Blue crab sampling was conducted from June to September 1991 to determine aspects of its distribution and habitat utilization in the lower Hudson River and some of the Hudson's tributaries.
Able, K.W.	006/87R/013	Resource/Key Species	Blue Crab	Rutgers University	Entire Estuary	1.992	Blue Crab (Callinectes sapidus) habitat utilization and survival in the Hudson River	Author(s): Able, K.W., Wilson, K.A. Grant Number(s): 006/87R/013 Title: Blue Crab (Callinectes sapidus) habitat utilization and survival in the Hudson River Year: 1992 Organization: Rutgers University Pages: 60 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Blue Crab Subject: Summary: A report on a project examining the life history distribution and abundance of blue crabs in the lower Hudson River during the period from May 1989 to June 1992.
Limburg, K.E.	010/99A	Resource/Key Species	River Herring	SUNY at Syracuse	Watershed	2.005	Blueback herrings:links from the watershed to upper trophic levels?	Author(s): Limburg, K.E. Grant Number(s): 010/99A Title: Blueback herrings:links from the watershed to upper trophic levels? Year: 2005 Organization: SUNY at Syracuse Pages: 6 Publication: HRF, report River Segment: Watershed Area of Interest: Resource/Key Species, River Herring Subject: Summary: Examined how the invasion of zebra mussels and the range expansion of herrings into the Mohawk River through the lock and canal system affected trophic status and general population of blueback herring.
Scharf, F.S.	006/98A	Resource/Key Species	Bay Anchovy	University of Massachusetts	Lower Estuary	2.001	Bluefish and striped bass predation on juvenile bay anchovy in the Hudson River	Author(s): Scharf, F.S. Grant Number(s): 006/98A Title: Bluefish and striped bass predation on juvenile bay anchovy in the Hudson River Year: 2001 Organization: University of Massachusetts Pages: 208 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Bay Anchovy Subject: Summary: This report details the results of a series of laboratory experiments conducted to examine the influence of predator and prey behavior on the outcome of size-structured species interactions between piscivorous fishes and their prey.
Bopp, R.F.	007/99A	Toxic Substances	Effects of Toxic Substances	Mount Sinai School of Medicin	Lower Estuary	2.005	Body Burdens of Mercury in Lower Hudson River Area Anglers	Author(s): Bopp, R.F., Gobeille, A.K., Godbold, J.H., Landrigan, P.J., Morland, K.B. Grant Number(s): 007/99A Title: Body Burdens of Mercury in Lower Hudson River Area Anglers Year: 2005 Organization: Mount Sinai School of Medicin Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: To evaluate associations between body burden of mercury and local fish consumption, the authors conducted a cross-sectional study of 191 anglers recruited from piers and fishing clubs.
Afilaka, A.	007/99A	Toxic Substances	Effects of Toxic Substances	Mount Sinai School of Medicin	Lower Estuary	2.000	Body Burdens of Persistent Pollutants in Hudson River Anglers	Author(s): Afilaka, A., Berkowitz, G., Bopp, R.F., Chillrud, S.N., Godbold, J.H., Golden, A.L., Landrigan, P.J., Simpson, H.J., Wolff, M.S. Grant Number(s): 007/99A Title: Body Burdens of Persistent Pollutants in Hudson River Anglers Year: 2000 Organization: Mount Sinai School of Medicin Pages: 25 p Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary:
Cole, J.	TP/04/12	Resource/Key Species	Zebra Mussels	University of Virginia	Freshwater Tidal	2.012	Body size and temperature effects on feeding in zebra mussels (Dreissena polymorpha)	Author(s): Cole, J., Gephart, J.A., Pace, M., Strayer, D. Grant Number(s): TP/04/12 Title: Body size and temperature effects on feeding in zebra mussels (Dreissena polymorpha) Year: 2012 Organization: University of Virginia Pages: 19 Publication: HRF, thesis River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: The introduction of zebra mussels to the Hudson River in 1991 caused strong impacts throughout the ecosystem. Since 2005, these ecosystem impacts have changed, likely as a result of a shift toward smaller-bodied mussels. Since this shift in size-structure has had a dramatic influence on the ecosystem, the cause of the size-structure is of interest in this project. Specifically, the role of temperature as a driver of the size-structure shift was studied using a combination of parameter estimations for a stage-structured matrix model based on long-term data, respiration differences among size classes at different temperatures (acute thermal effect), and the effect of increasing temperature on mortality (chronic thermal effect).
Swift, B.L.	024/86B/020	Resource/Key Species	Birds	NYS Dept. of Env. Conservation	Freshwater Tidal	1.988	Breeding Bird Communities in Hudson River Tidal Marshes	Author(s): Swift, B.L. Grant Number(s): 024/86B/020 Title: Breeding Bird Communities in Hudson River Tidal Marshes Year: 1988 Organization: NYS Dept. of Env. Conservation Pages: 41 Publication: HRF, manuscript River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Birds Subject: Summary: This study analyzes present day breeding bird communities in tidal freshwater marshes in the Hudson River estuary
Caraco, N.F.	010/99A	Resource/Key Species	River Herring	SUNY at Syracuse	Watershed	2.005	Broadened trophic niche in juvenile blueback herring (Alosa aestivalis); response to zebra mussels and range expansion	Author(s): Caraco, N.F., Harvey, F.R., Ju, S., Limburg, K.E., Schmidt, R.E. Grant Number(s): 010/99A Title: Broadened trophic niche in juvenile blueback herring (Alosa aestivalis); response to zebra mussels and range expansion Year: 2005 Organization: SUNY at Syracuse Pages: 60 Publication: HRF, manuscript River Segment: Watershed Area of Interest: Resource/Key Species, River Herring Subject: Summary: Analysis of historic (pre) and post zebra invasion data used to determine how the presence of zebra mussels affects juvenile blueback herring.
Peters, H.	016/00A	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	University of Miami	Lower Estuary	2.003	Broadly distributed and locally enhanced turbulent mixing in a tidal estuary	Author(s): Peters, H. Grant Number(s): 016/00A Title: Broadly distributed and locally enhanced turbulent mixing in a tidal estuary Year: 2003 Organization: University of Miami Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: Spatial variations of vertical turbulent mixing along a stretch of the Hudson River estuary are examined with focus on the vicinity of a "hydraulic control point" at the George Washington Bridge, where the cross section narrows and the thalweg takes a bend.
						2.007	Brookies at Black Rock curriculum	Author(s): Grant Number(s): Title: Brookies at Black Rock curriculum Year: 2007 Organization: Pages: 78 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary:
Clemants, S.	006/00A	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	Brooklyn Botanical Garden	Watershed	2.002	Brooklyn Botanic Garden New York Metropolitan Flora Project	Author(s): Clemants, S. Grant Number(s): 006/00A Title: Brooklyn Botanic Garden New York Metropolitan Flora Project Year: 2002 Organization: Brooklyn Botanical Garden Pages: 8 Publication: HRF, report River Segment: Watershed Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: Twenty voucher blocks in four Hudson River watersheds (Rondout, Hudson-Wappingers, Lower Hudson and Bronx River) were surveyed over two years and 2,600 plant specimens collected.
Bokuniewicz, H.J.	001/94A	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	SUNY at Stony Brook	Lower Estuary	1.996	Building the Turbidity Maximum in the Hudson River Estuary	Author(s): Bokuniewicz, H.J. Grant Number(s): 001/94A Title: Building the Turbidity Maximum in the Hudson River Estuary Year: 1996 Organization: SUNY at Stony Brook Pages: 40 p Publication: HRF, report River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: The mechanisms by which the Hudson River Estuary turbidity maximum is formed and maintained are explored.
Chambers, R.C.	013/01A	Toxic Substances	PCBs	NYU Medical Center	Lower Estuary	2.004	B[a]P-DNA binding in early life-stages of Atlantic tomcod: population differences and chromium modulation	Author(s): Chambers, R.C., Courtenay, S.C., Roy, N.K., Sorrentino, C., Wirgin, I.I. Grant Number(s): 013/01A Title: B[a]P-DNA binding in early life-stages of Atlantic tomcod: population differences and chromium modulation Year: 2004 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: The aims of this study were to determine in early life-stages of tomcod exposed to B[a]P if DNA binding levels differed in fish from the Hudson and Miramichi Rivers and if co-exposure to chromium could modulate this genotoxic effect.
Bartholomew, P.R.	008/86A/033	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	1.991	Cadmium Accumulation and Detoxification in a Cd-Resistant Population of the Oligochaete Limnodrilus hoffmeisteri	Author(s): Bartholomew, P.R., Klerks, P.L.M. Grant Number(s): 008/86A/033 Title: Cadmium Accumulation and Detoxification in a Cd-Resistant Population of the Oligochaete Limnodrilus hoffmeisteri Year: 1991 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Resistance to cadmium in worms from Foundry Cove was not due to a reduced accumulation but to higher levels of cadmium-binding protein. The elevated protein level is shown to be genetically determined.
Sanudo-Wilhelmy, S.A.	010/95A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.998	Cadmium and Manganese Distributions in the Hudson River Estuary: Interannual and Seasonal Variability	Author(s): Sanudo-Wilhelmy, S.A., Yang, M. Grant Number(s): 010/95A Title: Cadmium and Manganese Distributions in the Hudson River Estuary: Interannual and Seasonal Variability Year: 1998 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The interannual and seasonal variability of heavy metal distribution in Hudson River surface waters was explored.
Sanudo-Wilhelmy, S.A.	GF/04/97	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.998	Cadmium and Manganese in the Hudson River Estuary: Interannual and Seasonal Variability	Author(s): Sanudo-Wilhelmy, S.A., Yang, M. Grant Number(s): GF/04/97 Title: Cadmium and Manganese in the Hudson River Estuary: Interannual and Seasonal Variability Year: 1998 Organization: SUNY at Stony Brook Pages: 66 pp Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The distribution of cadmium and manganese in the surface waters of the Hudson River estuary was studied.
Levinton, J.S.	GF/02/93	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	1.998	Cadmium Resistance in an Oligochaete and its Effect on Cadmium Trophic Transfer to an Omnivorous Shrimp	Author(s): Levinton, J.S., Lopez, G.R., Wallace, W.G. Grant Number(s): GF/02/93 Title: Cadmium Resistance in an Oligochaete and its Effect on Cadmium Trophic Transfer to an Omnivorous Shrimp Year: 1998 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: How trophic transfer of cadmium is affected by the resistance of a worm to cadmium was studied.
Junkins, R.A.	TP/03/02	Toxic Substances	Effects of Toxic Substances	SUNY Stony Brook	Freshwater Tidal	2.003	Cadmium Resistance in Limnodrilus hoffmeisteri in Foundry Cove Following a Super Fund Cleanup	Author(s): Junkins, R.A., Levinton, J.S. Grant Number(s): TP/03/02 Title: Cadmium Resistance in Limnodrilus hoffmeisteri in Foundry Cove Following a Super Fund Cleanup Year: 2003 Organization: SUNY Stony Brook Pages: 16 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: This study examined the effects of the recent restoration of Foundry Cove on an evolved population of the tubificid oligochaete, Limnodrilus hoffmeisteri.
Wirgin, I.I.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	2.003	Calibration and modulation of cytochrome P4501A Induction in Dioxin Exposed Atlantic Tomcod	Author(s): Wirgin, I.I. Grant Number(s): 011/94A Title: Calibration and modulation of cytochrome P4501A Induction in Dioxin Exposed Atlantic Tomcod Year: 2003 Organization: NYU Medical Center Pages: 6 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Describes and compares the conger-specific PCDD/PCDFs and PCB profiles in adult and YOY tomcod from sites throughout the lower Hudson RIver estuary.
Caraco, N.F.	003/86A/012	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.992	Can phytoplankton maintain a positive carbon balance in a turbid, freshwater, tidal estuary?	Author(s): Caraco, N.F., Cole, J.J., Peierls, B.L. Grant Number(s): 003/86A/012 Title: Can phytoplankton maintain a positive carbon balance in a turbid, freshwater, tidal estuary? Year: 1992 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: An analysis of phytoplankton primary production in the tidal freshwater portion of the Hudson River estuary suggests that net primary production is strongly limited by light and mixing regime.
Dueker, M.E.	TP/03/08	Dynamics of Food Webs	Ecosystem Processes	Lamont-Doherty Earth Obsveratory	Tributaries	2.009	Capturing the Nutrient Overenrichment-Eutrophication-Hypoxia Cycle in Newtown Creek	Author(s): Dueker, M.E., O'Mullan, G. Grant Number(s): TP/03/08 Title: Capturing the Nutrient Overenrichment-Eutrophication-Hypoxia Cycle in Newtown Creek Year: 2009 Organization: Lamont-Doherty Earth Obsveratory Pages: 24 Publication: HRF, report River Segment: Tributaries Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Nutrient loading in estuarine waters leads to alterations to biogeochemical cycling, decreased oxygen levels and massive fish and shellfish kills. In highlyurbanized areas, nutrient loads can be delivered by rain events containing raw sewage and allochthonous bacteria including pathogens. Past transect sampling of Newtown Creek, an urbanized tributary of the Lower Hudson River Estuary, has revealed that this tributary experiences a nutrient overenrichment-eutrophication-hypoxia (NOEH) cycle, throughout the summer, displaying high variability in chlorophyll and oxygen levels in surface waters. In order to assess the drivers behind this extreme variability, a major summer rain event was captured during a week of daily sampling on the creek.
Howarth, R.W.	005/92A	Dynamics of Food Webs	Ecosystem Processes	Cornell University	Freshwater Tidal	1.995	Carbon and oxygen cycling in the Hudson River estuary: measurement of metabolism and relationship to the watershed process	Author(s): Howarth, R.W. Grant Number(s): 005/92A Title: Carbon and oxygen cycling in the Hudson River estuary: measurement of metabolism and relationship to the watershed process Year: 1995 Organization: Cornell University Pages: 1 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Documents accomplishments under grant.
Caraco, N.F.	002/99A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	2.001	Carbon in catchments: connecting terrestrial carbon losses with aquatic metabolism	Author(s): Caraco, N.F., Cole, J.J. Grant Number(s): 002/99A Title: Carbon in catchments: connecting terrestrial carbon losses with aquatic metabolism Year: 2001 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Using a moderate-sized catchment in North America, the Hudson River (catchment area 33500 km2), evidence is presented for the magnitude of net heterotrophy.
Fruci, J.R.	004/87A/010	Dynamics of Food Webs	Ecosystem Processes	Cornell University	Freshwater Tidal	1.990	Carbon, nitrogen and phosphorus loading to the tidal, freshwater portion of the Hudson River estuary from point and nonpoint sources: preliminary ana	Author(s): Fruci, J.R., Howarth, R.W. Grant Number(s): 004/87A/010 Title: Carbon, nitrogen and phosphorus loading to the tidal, freshwater portion of the Hudson River estuary from point and nonpoint sources: preliminary ana Year: 1990 Organization: Cornell University Pages: 59 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Provides estimates of the inputs of dissolved and particulate forms of N, P, and C to the tidal portion of the Hudson River estuary using models.
Daniels, R.A.	001/84X/31	Education	Curation & Exhibition	New York State Museum	Entire Estuary	1.986	Catalogue of Hudson River Fish in the New York State Museum Collection	Author(s): Daniels, R.A. Grant Number(s): 001/84X/31 Title: Catalogue of Hudson River Fish in the New York State Museum Collection Year: 1986 Organization: New York State Museum Pages: 8 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Education, Curation & Exhibition Subject: Summary: A catalogue of the collection of over 100,000 lots of fish.
Dueker, M.E.	007/13A	Toxic Substances	Pathogens	Queens College, CUNY	Lower Estuary	2.017	Challenges to Managing Microbial Fecal Pollution in Coastal Environments: Extra-Enteric Ecology and Microbial Exchange Among Water, Sediment, and Air	Author(s): Dueker, M.E., Juhl, A.R., O'Mullan, G.D. Grant Number(s): 007/13A Title: Challenges to Managing Microbial Fecal Pollution in Coastal Environments: Extra-Enteric Ecology and Microbial Exchange Among Water, Sediment, and Air Year: 2017 Organization: Queens College, CUNY Pages: 16 Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Pathogens Subject: Summary: Human population growth, especially in coastal urban cities, increases the potential for fecal pollution of adjacent waterways, requiring continued advances in pollution monitoring and management. Infections remain the largest health risk from contact with fecal- and sewage-polluted waters, and a small number of fecal indicator bacteria (FIB) are used as primary pollution assessment tools. While FIB continue to be useful tools, some of the assumptions about the behavior of FIB in the environment, and the associated pathways for pathogen exposure, have come into question. Research into the extra-enteric ecology of these indicators has identified management-relevant complexities including particle association, prolonged environmental persistence, and multidirectional microbial exchange among water, sediment, and air. These complexities provide pportunities for improving current monitoring and modeling strategies and to better understand exposure pathways for sewage-related infections.
Berlinsky, D.L.	GF/01/87	Toxic Substances	PCBs	University of Rhode Island	Entire Estuary	1.990	Changes in Gonadal Hormones During Oocyte Development in the Striped Bass	Author(s): Berlinsky, D.L., Specker, Jennifer L. Grant Number(s): GF/01/87 Title: Changes in Gonadal Hormones During Oocyte Development in the Striped Bass Year: 1990 Organization: University of Rhode Island Pages: 7 Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: This article is a discussion of wild striped bass collected from coastal waters and spawning areas to describe the endocrine correlation of oocyte development in non-captive, migratory fish.
Dittel, A.I.	009/99A	Dynamics of Food Webs	Ecosystem Processes	University of Delaware	Freshwater Tidal	2.003	Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York	Author(s): Dittel, A.I., Findlay, S.E.G., Fischer, D.T., Kirchman, D.L. Grant Number(s): 009/99A Title: Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York Year: 2003 Organization: University of Delaware Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: This study examined the effects of dissolved organic matter on ecoenzymatic activity, bacterial growth and community structure in the Hudson River.
Allen, B.J.	013/00A	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	2.003	Changes in Benthos Following the Clean Up of a Severely Metal-polluted Cove in the Hudson River Estuary: Environmental Restoration or Ecological Disturbance?	Author(s): Allen, B.J., Kelaher, B.P., Levinton, J.S., Oomen, J., Wong, W.H. Grant Number(s): 013/00A Title: Changes in Benthos Following the Clean Up of a Severely Metal-polluted Cove in the Hudson River Estuary: Environmental Restoration or Ecological Disturbance? Year: 2003 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: We studied changes in macrobenthic communites following the environmental clean up of metal-polluted (cadmium, nickel and cobalt) sediments in Foundry Cove, a small inlet within the Hudson River Estuary, New York.
Caraco, N.F.	009/05A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Entire Estuary	2.007	Changes in Cyanobacterial Dominance Following the Invasion of the Zebra Mussel Dreissena polymorpha: Long-Term Results from the Hudson River Estuary	Author(s): Caraco, N.F., Cole, J.J., Fernald, S.H. Grant Number(s): 009/05A Title: Changes in Cyanobacterial Dominance Following the Invasion of the Zebra Mussel Dreissena polymorpha: Long-Term Results from the Hudson River Estuary Year: 2007 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The introduction of invasive bivalves such as the zebra mussel can have profound effects on aquatic ecosystems, including decreasing phytoplankton biomass and changes in the taxonomic composition of phytoplankton. This study used a 12-yr record in the Hudson River to explore the relationship between phytoplankton and zebra mussel filtration
Chambers, R.C.	004/00A	Resource/Key Species	Other Fish	National Marine Fisheries Ser	Lower Estuary	2.005	Changes in Fish assemblages in the Tidal Hudson River, New York	Author(s): Chambers, R.C., Daniels, R.A., Limburg, K.E., Schmidt, R.E., Strayer, D.L. Grant Number(s): 004/00A, 020/00A Title: Changes in Fish assemblages in the Tidal Hudson River, New York Year: 2005 Organization: National Marine Fisheries Ser Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Other Fish Subject: Summary: The authors use data from surveys conducted in 1936, the 1970s, the 1980s, and the 1990s to examine changes in fish assmeblages and from other sources dating back to 1842.
Berlinsky, D.L.	GF/01/87	Toxic Substances	PCBs	University of Rhode Island	Entire Estuary	1.989	Changes in Gonadal Hormones during Oocyte Development in the Striped Bass, Morone saxatilis	Author(s): Berlinsky, D.L. Grant Number(s): GF/01/87 Title: Changes in Gonadal Hormones during Oocyte Development in the Striped Bass, Morone saxatilis Year: 1989 Organization: University of Rhode Island Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: A PhD dissertation describing oocyte development in striped bass was correlated with distinct phases of endocrine control. Gonadosomatic indices were also used.
Findlay, S.E.G.	TP/02/90	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	Russell Sage College	Entire Estuary	1.991	Changes in Interstitial Water Chemistry Along a Salinity Gradient in the Hudson River	Author(s): Findlay, S.E.G., Gould, K.I. Grant Number(s): TP/02/90 Title: Changes in Interstitial Water Chemistry Along a Salinity Gradient in the Hudson River Year: 1991 Organization: Russell Sage College Pages: 17 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: This study measured the concentration of two gaseous end products of carbon mineralization, dissolved inorganic carbon (DIC) and methane in interstitial waters at four sites along the Hudson River Estuary.
Caraco, N.F.	002/93A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.998	Changes in Phytoplankton Community Structure During the Zebra Mussel (Dreissena polymorpha) Invasion of the Hudson River (New York)	Author(s): Caraco, N.F., Cole, J.J., Smith, T.E., Stevenson, R.J. Grant Number(s): 002/93A Title: Changes in Phytoplankton Community Structure During the Zebra Mussel (Dreissena polymorpha) Invasion of the Hudson River (New York) Year: 1998 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Differences in the cell density and taxonomic composition of phytoplankton assemblages in the tidal freshwater portion of the Hudson River were analyzed in order to assess the impact of the zebra mussel invasion.
O'Mullan, G.D.	TP/07/12	Toxic Substances	Pathogens	Queens College, CUNY	Lower Estuary	2.012	Changes in species diversity of sediment associated Fecal Indicator Bacteria with level of sewage loading and time of incubation	Author(s): O'Mullan, G.D., Schneider, E. Grant Number(s): TP/07/12 Title: Changes in species diversity of sediment associated Fecal Indicator Bacteria with level of sewage loading and time of incubation Year: 2012 Organization: Queens College, CUNY Pages: 22 Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Toxic Substances, Pathogens Subject: Summary: The Fecal Indicator Bacteria (FIB), E. coli and Enterococci, are commonly used by Hudson River monitoring programs to quantify the level of sewage pollution in estuarine water and to provide information about the health risk to recreators from sewage associated bacteria. In this study, FIB were quantified, using cultivation-based techniques, in water and sediment samples collected from six locations in the estuary, and the persistence of FIB in sediment was investigated in laboratory incubation experiments.
Berlinsky, D.L.	GF/01/87	Toxic Substances	PCBs	University of Rhode Island	Entire Estuary	1.989	Changes in Steroid Hormones during Oocyte Development in the Striped Bass, Morone saxatilis	Author(s): Berlinsky, D.L. Grant Number(s): GF/01/87 Title: Changes in Steroid Hormones during Oocyte Development in the Striped Bass, Morone saxatilis Year: 1989 Organization: University of Rhode Island Pages: 133 Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: A PhD dissertation describing oocyte development in striped bass was correlated with distinct phases of endocrine control. Gonadosomatic indices were also used.
Bopp, R.F.	010/88A/027	Dynamics of Food Webs	Ecosystem Processes	Columbia University	Lower Estuary	1.988	Changes in Total Waste Water Ammonia Loading During the Last Two Decades in the Hudson Estuary	Author(s): Bopp, R.F., Clark, J.F., Deck, B.L., Simpson, H.J. Grant Number(s): 010/88A/027 Title: Changes in Total Waste Water Ammonia Loading During the Last Two Decades in the Hudson Estuary Year: 1988 Organization: Columbia University Pages: Publication: HRF, manuscript River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Analysis of Lamont Doherty Earth Observatory data on nitrogen species, freshwater discharge rates, drainage, ammonia and salinity were studied for long term changes.
Schultz, E.T.	008/13A	Resource/Key Species	Zebra Mussels	University of Connecticut	Freshwater Tidal	2.019	Changes over three decades in feeding success of young American Shad Alosa sapidissima are influenced by invading zebramussels Dreissena polymorpha	Author(s): Schultz, E.T., Smircich, M.G., Strayer, D.L. Grant Number(s): 008/13A Title: Changes over three decades in feeding success of young American Shad Alosa sapidissima are influenced by invading zebramussels Dreissena polymorpha Year: 2019 Organization: University of Connecticut Pages: 13 Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: We analyzed the feeding ecology of young American Shad Alosa sapidissima over a 25 yr period in the Hudson River Estuary, USA, where population declines have been attributed in part to food web alterations associated with invasive zebra mussels Dreissena polymorpha.
Findlay, S.	009/07A	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	2.012	Chapter 1: Ecology of freshwater shore zones	Author(s): Findlay, S., Strayer, D.L. Grant Number(s): 009/07A Title: Chapter 1: Ecology of freshwater shore zones Year: 2012 Organization: Cary Inst. Of Ecosystem Studies Pages: 203 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: Freshwater shore zones are among the most ecologically valuable parts of the planet, but have been heavily damaged by human activities. Because the management and rehabilitation of freshwater shore zones could be improved by better use of ecological knowledge, we summarize here what is known about their ecological functioning.
Alben, K.T.	TP/03/99	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	Union College	Entire Estuary	2.000	Characteristics of Dissolved Organic Carbon from Trapa natans Wetlands and the Hudson River	Author(s): Alben, K.T., George, J.R. Grant Number(s): TP/03/99 Title: Characteristics of Dissolved Organic Carbon from Trapa natans Wetlands and the Hudson River Year: 2000 Organization: Union College Pages: 26 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: The goal of this project was to initiate characterization of dissolved organic carbon (DOC) from two Trapa natans (water chestnut) wetlands and their adjoining rivers, on the tidal Hudson River at Tivoli South Bay, and on non-tidal Mohawk River at Niskayuna.
Bauer, J.E.	GF/01/06	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	College of William and Mary	Lower Estuary	2.012	Characteristics of water-soluble organic carbon associated with aerosol particles in the eastern United States	Author(s): Bauer, J.E., Dickhut, R.M., Wozniak, A.S. Grant Number(s): GF/01/06 Title: Characteristics of water-soluble organic carbon associated with aerosol particles in the eastern United States Year: 2012 Organization: College of William and Mary Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: Desorption kinetics and sources (fossil vs. contemporary) of the water soluble organic carbon (WSOC) component of aerosol particles were examined at two sites on the east coast of the United States. Experiments revealed that WSOC is released either rapidly as one homogeneous pool or via biphasic kinetics with one rapidly and one slowly desorbing pool. The majority (>85%) of WSOC was desorbed within the first 15 min of immersion in water, suggesting that this material can be rapidly incorporated into rainwater pre-depositionally or surface waters post-depositionally and transported through watersheds. Radiocarbon (14C) measurements showed that on average 12 4% and 14 2% of WSOC from sites in New York and Virginia, respectively, was derived from fossil sources. By contrast, mass balance calculations revealed water-insoluble organic carbon to have significantly greater fossil contributions. These findings suggest that contemporary biogenic aerosol OC is preferentially incorporated into the aqueous phase and may be transported relatively rapidly through watersheds and aquatic systems. In contrast, the more highly aged and fossil aerosol component remains in particulate form and is more likely to be retained on particles or in soils or aquatic sediments.
Findlay, S.E.G.	013/93A	Resource/Key Species	Zebra Mussels	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.997	Characteristics of Zebra Mussel (Dreissena polymorpha) Biodeposits in a Tidal Freshwater Estuary	Author(s): Findlay, S.E.G., Roditi, H.A., Strayer, D.L., Grant Number(s): 013/93A, Title: Characteristics of Zebra Mussel (Dreissena polymorpha) Biodeposits in a Tidal Freshwater Estuary Year: 1997 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: Biodeposits (feces and pseudofeces) of zebra mussels in the tidal freshwater Hudson were found to contain higher levels of organic matter, chlorophyll, phaeopigments, carbon, nitrogen, and bacterial production relative to control sediments. They were also more easily resuspended into the water column.
Grunwald, C.M.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	1.995	Characterization and Prevalence of a Polymorphism in the 3' Untranslated Region of Cytochrome P4501A1 in Cancer-prone Atlantic Tomcod	Author(s): Grunwald, C.M., Konkle, B., Kreamer, G-L., Roy, N.K., Wirgin, I.I. Grant Number(s): 011/94A Title: Characterization and Prevalence of a Polymorphism in the 3' Untranslated Region of Cytochrome P4501A1 in Cancer-prone Atlantic Tomcod Year: 1995 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: The molecular basis and structure of a genetic polymorphism of the CYP1A gene of cancer-prone Atlantic tomcod from the Hudson River were explored.
Candelmo, A.	012/13A	Resource/Key Species	Sturgeon	National Oceanic and Atmospheric Administration	Entire Estuary	2.018	Characterization of AHR1 and its functional activity in Atlantic sturgeon and shortnose sturgeon	Author(s): Candelmo, A., Chambers, R.C., DellaTorre, M., Habeck, E., Roy, N.K., Wirgin, I. Grant Number(s): 012/13A Title: Characterization of AHR1 and its functional activity in Atlantic sturgeon and shortnose sturgeon Year: 2018 Organization: National Oceanic and Atmospheric Administration Pages: 11 Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: We characterized AHR1 in both Atlantic Coast sturgeon species, evaluated its’ in vivo expression in young life-stages and in multiple tissues of shortnose sturgeon, and tested its ability to drive reporter gene expression in AHR-deficient cells treated with graded doses of PCB126 and TCDD.
Candelmo, A.	012/13A	Resource/Key Species	Sturgeon	National Oceanic and Atmospheric Administration	Entire Estuary	2.018	Characterization of AHR2 and CYP1A expression in Atlantic sturgeon and shortnose sturgeon treated with coplanar PCBs and TCDD	Author(s): Candelmo, A., Chambers, R.C., DellaTorre, M., Nadas, A., Roy, N.K., Wirgin, I. Grant Number(s): 012/13A Title: Characterization of AHR2 and CYP1A expression in Atlantic sturgeon and shortnose sturgeon treated with coplanar PCBs and TCDD Year: 2018 Organization: National Oceanic and Atmospheric Administration Pages: 13 Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: Atlantic sturgeon and shortnose sturgeon co-occur in many estuaries along the Atlantic Coast of North America. Both species are protected under the U.S. Endangered Species Act and internationally on the IUCN Red list and by CITES. Early life-stages of both sturgeons may be exposed to persistent aromatic hydrocarbon contaminants such as PCBs and PCDD/Fs which are at high levels in the sediments of impacted spawning rivers. Our objective was to compare the PCBs and TCDD sensitivities of both species with those of other fishes and to determine if environmental concentrations of these contaminants approach those that induce toxicity to their young lifestages under controlled laboratory conditions.
Green, D.M.	TP/07/90	Public Policy	Public Policy	Cornell University	Entire Estuary	1.991	Characterization of Angler Activity on the Hudson River Estuary	Author(s): Green, D.M., Jackson, J. Grant Number(s): TP/07/90 Title: Characterization of Angler Activity on the Hudson River Estuary Year: 1991 Organization: Cornell University Pages: 27 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: This report summarizes an angler survey conducted in late August 1990 of 678 anglers in the Stuyvesant to Kingston reach of the Hudson River.
Ding, Q.	004/99A	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Lower Estuary	2.002	Characterization of atmospheric trace elements on PM2.5 particulate matter over the New York-New Jersey harbor estuary	Author(s): Ding, Q., Eisenreich, S.J., Field, M.P., Gao, Y., Gigliotti, C.L., Glenn, IV, T.R., Li, H., Nelson, E.D., Sherrell, R.M., van Ry, D.A. Grant Number(s): 004/99A Title: Characterization of atmospheric trace elements on PM2.5 particulate matter over the New York-New Jersey harbor estuary Year: 2002 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The purpose of this work is to characterize trace elements associated with atmospheric particulate matter of 2.5 mm and smaller in size (PM2.5) over the New York-New Jersey (NY-NJ) Harbor Bight.Using low-volume PM2.5 samplers, aerosol particulate samples were simultaneously collected for the first time at three locations in the region, Sandy Hook in the coast, New Brunswick and Liberty Science Center (Jersey City) in nearby urban areas, during January 1998-January 1999.
Konkle, B.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	1.996	Characterization of CYP1A1 Gene Regulatory Elements in Cancer-Prone Atlantic Tomcod	Author(s): Konkle, B., Roy, N.K., Wirgin, I.I. Grant Number(s): 011/94A Title: Characterization of CYP1A1 Gene Regulatory Elements in Cancer-Prone Atlantic Tomcod Year: 1996 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Previous studies have shown that CYP1A1 induction in tomcod from the Hudson River is inhibited. This study investigated the reasons for this inhibition and found that persistent DNA-protein interactions in tomcod exposed to halogenated compounds leads to the inhibition.
Barten, P.K.	TP/06/97	Public Policy	Public Policy	Yale University	Upper Hudson River	1.998	Characterization of Demographics and Attitudes of Farmers in Dutchess County, New York	Author(s): Barten, P.K., Pinney, D.A.K. Grant Number(s): TP/06/97 Title: Characterization of Demographics and Attitudes of Farmers in Dutchess County, New York Year: 1998 Organization: Yale University Pages: 17 Publication: HRF, report River Segment: Upper Hudson River Area of Interest: Public Policy, Public Policy Subject: Summary: This study continued an investigation of background and attitudinal characteristics of farmers in the Saw Kill watershed in the Hudson River valley and expanded the sample to dairy farmers throughout Dutchess County, New York.
Barten, P.K.	TP/08/96	Public Policy	Public Policy	Yale University	Freshwater Tidal	1.997	Characterization of Livestock Management Practices in the Tivoli Bays Watersheds	Author(s): Barten, P.K., Pinney, D.A.K. Grant Number(s): TP/08/96 Title: Characterization of Livestock Management Practices in the Tivoli Bays Watersheds Year: 1997 Organization: Yale University Pages: 14 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Public Policy, Public Policy Subject: Summary: This study surveyed livestock owners in the Saw Kill and Stony Creek watersheds of the Hudson River Valley in New York to learn more about their objectives and management practices and to provide data for the development and testing of a Spatially Eplicit Delivery Model (SEDMOD) for nonpoint source pollutants.
Hart, J.T.	TP/05/93	Resource/Key Species	Sturgeon	New York University	Entire Estuary	1.994	Characterization of Mitochondrial DNA Genotypes in Atlantic Sturgeon (Acipenser oxyrinchus) from the Hudson River: The Extent of Spatial and Temporal Heterogeneity	Author(s): Hart, J.T., Wirgin, I.I. Grant Number(s): TP/05/93 Title: Characterization of Mitochondrial DNA Genotypes in Atlantic Sturgeon (Acipenser oxyrinchus) from the Hudson River: The Extent of Spatial and Temporal Heterogeneity Year: 1994 Organization: New York University Pages: 13 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: This study was undertaken to systematically characterize mtDNA genotypes in Atlantic sturgeon from the Hudson River.
Cook, W.	TP/03/86	Resource/Key Species	Black Bass	Columbia-Greene Comm. College	Freshwater Tidal	1.987	Characterization of Spawning and Nursery Habitats of Largemouth Bass (Micropterus salmoides) in the Stockport Component of the Hudson River National Estuarine Research Reserve	Author(s): Cook, W., Nack, S.B. Grant Number(s): TP/03/86 Title: Characterization of Spawning and Nursery Habitats of Largemouth Bass (Micropterus salmoides) in the Stockport Component of the Hudson River National Estuarine Research Reserve Year: 1987 Organization: Columbia-Greene Comm. College Pages: 22 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Black Bass Subject: Summary: Largemouth bass nesting habitats were studied in the Stockport Component of the Hudson River Estuarine Sanctuary with and attempt to characterize important factors which affect and regulate where and to what extent largemouth bass nesting has taken place.
Barten, P.K.	TP/02/91	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	NYC DEC	Tributaries	1.992	Characterization of Streamflow and Sediment Sourse Areas for the Saw Kill Watershed	Author(s): Barten, P.K., Reichheld, E.A. Grant Number(s): TP/02/91 Title: Characterization of Streamflow and Sediment Sourse Areas for the Saw Kill Watershed Year: 1992 Organization: NYC DEC Pages: 27 Publication: HRF, report River Segment: Tributaries Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: A geographic information system (GIS) database was developed to characterize the complex interaction of terrain features, soils, vegetation, and land use in order to understand the heterogeneous watershed of the Saw Kill.
Roy, N.K.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	1.997	Characterization of the Aromatic Hydrocarbon Receptor Gene and Its Expression in Atlantic Tomcod	Author(s): Roy, N.K., Wirgin, I.I. Grant Number(s): 011/94A Title: Characterization of the Aromatic Hydrocarbon Receptor Gene and Its Expression in Atlantic Tomcod Year: 1997 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: The inducibility of the CYP1A1 gene and the expression of a gene that codes for a PAH receptor are characterized in tomcod from the Hudson and Mirimichi Rivers.
Chambers, R.C.	013/01A	Toxic Substances	PCBs	NYU Medical Center	Lower Estuary	2.006	Characterization of the aryl hydrocarbon receptor repressor and a comparison of its expression in atlantic tomcod from resistant and sensitive populations	Author(s): Chambers, R.C., Courtenay, S.C., Roy, N.K., Wirgin, I.I. Grant Number(s): 013/01A Title: Characterization of the aryl hydrocarbon receptor repressor and a comparison of its expression in atlantic tomcod from resistant and sensitive populations Year: 2006 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: Sought to determine if basal expression or inducibility of aryl hydrocarbon receptor repressor (AHRR) mRNA is higher in tomcod from the resistant Hudson River population than in those from sensitive populations.
Brownawell, B.J.	003/96A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Lower Estuary	1.999	Chemical and biological availability of sediment-sorbed hydrophobic organic contaminants	Author(s): Brownawell, B.J., Lamoureux, E.M. Grant Number(s): 003/96A Title: Chemical and biological availability of sediment-sorbed hydrophobic organic contaminants Year: 1999 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: This study was designed to test the hypothesis that desorption is an important process controlling the bioavailability of HOCs to deposit-feeding organisms by conducting desorption and bioavailability experiments with field contaminated sediments from New York Harbor.
Jonasdottir, S.H.	012/90A/032	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.992	Chemical Composition of Food and the Reproductive Success of the Copepods ACARTIA TONSA, ACARTIA HUDSONICA and TEMORA LONGICORNIS	Author(s): Jonasdottir, S.H. Grant Number(s): 012/90A/032 Title: Chemical Composition of Food and the Reproductive Success of the Copepods ACARTIA TONSA, ACARTIA HUDSONICA and TEMORA LONGICORNIS Year: 1992 Organization: SUNY at Stony Brook Pages: 277 p Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: This is a dissertation on the effect of the chemical composition of food on the reproductive success of the copepods.
Chillrud, S.N.	GF/02/94	Toxic Substances	PCBs	Columbia University	Lower Estuary	1.994	Chemical Weathering of Phosphate and Germanium in Glacial Meltwater Streams: Effects of subglacial Pyrite Oxidation	Author(s): Chillrud, S.N., Froelich, P.N., Pedrozo, F.L., Planas, H.F., Temporetti, P.F. Grant Number(s): GF/02/94 Title: Chemical Weathering of Phosphate and Germanium in Glacial Meltwater Streams: Effects of subglacial Pyrite Oxidation Year: 1994 Organization: Columbia University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: Data from three glacial meltwater streams draining Mt. Tronador in the southern Argentine Andes show that subglacial pyrite oxidation and the subsequent precipitation of iron oxides strongly influence dissolved phosphate concentrations but do not appear to affect dissolved germanium concentrations.
Eisenreich, S.J.	004/99A	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Lower Estuary	2.004	Chlordanes in the Mid-Atlantic Atmosphere: New Jersey 1997-1999	Author(s): Eisenreich, S.J., Gigliotti, C.L., Nelson, E.D., Offenberg, J.H. Grant Number(s): 004/99A Title: Chlordanes in the Mid-Atlantic Atmosphere: New Jersey 1997-1999 Year: 2004 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: To characterize the atmospheric dynamics and behavior of chlordane compounds in the mid-Atlantic region of the United States, atmospheric concentrations were measured in 1997-1999 at three New Jersey locations as part of the New Jersey Atmospheric Deposition Network (NJADN) project.
Bopp, R.F.	015/85B/004	Toxic Substances	Fate & Transport of Toxic Substances	Columbia University	Entire Estuary	1.987	Chlorinated Hydrocarbons and Water Quality Issues in New York City Municipal Supply	Author(s): Bopp, R.F., Deck, B.L., Simpson, H.J., Warren, S.D. Grant Number(s): 015/85B/004 Title: Chlorinated Hydrocarbons and Water Quality Issues in New York City Municipal Supply Year: 1987 Organization: Columbia University Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Transcript of a conference presentation on research and findings of water quality data including trihalomethane data, dissolved organic carbon data and polychlorinated biphenyl data.
Clark, J.F.	011/92A	Toxic Substances	Fate & Transport of Toxic Substances	Columbia University	Lower Estuary	1.995	Chlorofluorocarbons in the Hudson estuary during summer months	Author(s): Clark, J.F., Simpson, H.J., Smethie Jr., W.M. Grant Number(s): 011/92A Title: Chlorofluorocarbons in the Hudson estuary during summer months Year: 1995 Organization: Columbia University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: CFC concentrations in the Hudson estuary were found to be greater than the atmospheric solubility equilibrium concentration.
Sanudo-Wilhelmy, S.A.	015/95A	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	University of Connecticut	Lower Estuary	1.999	Chromium Cycling in Surface Waters of the Hudson River Estuary	Author(s): Sanudo-Wilhelmy, S.A., Swanson, R.L., Young, M.H. Grant Number(s): 015/95A, 010/95A Title: Chromium Cycling in Surface Waters of the Hudson River Estuary Year: 1999 Organization: University of Connecticut Pages: 60 pp Publication: HRF, manuscript River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: The spatial and temporal variability of chromium distribution was investigated in surface waters of the Hudson River estuary.
Armstrong, R.	TP/07/85	Toxic Substances	Fate & Transport of Toxic Substances	Russell Sage College	Freshwater Tidal	1.986	Chronological Determination of Mercury, Lead, and Cadmium in two Hudson River Freshwater Tidal Marshes	Author(s): Armstrong, R., Schell, W.R., Stevenson, K.A. Grant Number(s): TP/07/85 Title: Chronological Determination of Mercury, Lead, and Cadmium in two Hudson River Freshwater Tidal Marshes Year: 1986 Organization: Russell Sage College Pages: 25 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Swamp areas located within Stockport and Tivoli, two Hudson River freshwater tidal marshes, were cored to study the feasibility of using these areas for the chronological determination of certain anthropogenic pollutants.
Benoit, G.J.	TP/02/92	Toxic Substances	Fate & Transport of Toxic Substances	Yale University	Freshwater Tidal	1.993	Chronological Variations in Concentrations of Heavy Metals in Sediments of the Tivoli South Bay: A Study Using 210-Pb Dating Methodology	Author(s): Benoit, G.J., Wang, X. Grant Number(s): TP/02/92 Title: Chronological Variations in Concentrations of Heavy Metals in Sediments of the Tivoli South Bay: A Study Using 210-Pb Dating Methodology Year: 1993 Organization: Yale University Pages: 17 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The research in this study was conducted using 210-Pb dating techniques to gather information on heavy metal pollutants (Pb, Cu, and Zn) in Tivoli South Bay of the Hudson River National Estuarine Research Reserve ecosystem with emphasis on their historical variations and residence time in surficial sediments.
Capriulo, G.M.	002/83A/005	Dynamics of Food Webs	Ecosystem Processes	SUNY at Purchase	Lower Estuary	1.986	Ciliate feeding: effect of food presence or absence on occurence of striae in tintinnids	Author(s): Capriulo, G.M., Gold, K., Taveras, J. Grant Number(s): 002/83A/005 Title: Ciliate feeding: effect of food presence or absence on occurence of striae in tintinnids Year: 1986 Organization: SUNY at Purchase Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The process of prey capture in a ciliate was investigated.
Schiafo, R.	004/03A	Public Policy	Public Policy	Scenic Hudson, Inc.	Entire Estuary	2.004	Citizens' Guide to Hudson River natural Resource Damage Assessment and Restoration	Author(s): Schiafo, R. Grant Number(s): 004/03A Title: Citizens' Guide to Hudson River natural Resource Damage Assessment and Restoration Year: 2004 Organization: Scenic Hudson, Inc. Pages: 62 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: This guide is intended to help citizens understand the lengthy scientific and legal process set up to assess and restore injured natural resources with particular focus on the Hudson River PCBs Superfund site.
Limburg, K.E.	010/93A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Lower Estuary	1.997	Cladoceran Dynamics and the Recruitment of Larval Morone in the Hudson River Estuary	Author(s): Limburg, K.E., Pace, M.L. Grant Number(s): 010/93A Title: Cladoceran Dynamics and the Recruitment of Larval Morone in the Hudson River Estuary Year: 1997 Organization: Cary Inst. Of Ecosystem Studies Pages: 125 p Publication: HRF, report River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The hypothesis that the spring bloom of zooplankton in the Hudson River provides a growth and survival advantage to larval striped bass and white perch was tested.
Chakrapani, G.J.	003/92A	Toxic Substances	Fate & Transport of Toxic Substances	University of Delaware	Entire Estuary	2.001	Clays of Hudson River: clay mineralogy of the Hudson River and estuary	Author(s): Chakrapani, G.J., Gibbs, R.J., Jha, P.K. Grant Number(s): 003/92A Title: Clays of Hudson River: clay mineralogy of the Hudson River and estuary Year: 2001 Organization: University of Delaware Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Bottom and suspended sediment samples from along the lower 120 km of the Hudson River were analyzed for their clay mineralogy.
Fuhrman, J.A.	004/85A/023	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.988	Clearance of bacteria-sized particles by natural populations of nanoplankton in the Chesapeake Bay outflow	Author(s): Fuhrman, J.A., McManus, G.B. Grant Number(s): 004/85A/023 Title: Clearance of bacteria-sized particles by natural populations of nanoplankton in the Chesapeake Bay outflow Year: 1988 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The uptake of bacteria-sized particles by non-pigmented nanoplankton was measured late winter and spring in the Chesapeake Bay outflow plume.
Mylod, J.	018/83B/50	Education	Education (General)	Hudson River Sloop Clearwater	Freshwater Tidal	1.985	Clearwater's Hudson River Community Education Program	Author(s): Mylod, J. Grant Number(s): 018/83B/50 Title: Clearwater's Hudson River Community Education Program Year: 1985 Organization: Hudson River Sloop Clearwater Pages: 48 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Education, Education (General) Subject: Summary: A report on the Clearwater's Hudson River Community Education Program.
Allam, B.	006/07A	Resource/Key Species	Other Invertebrates	SUNY at Stony Brook	Lower Estuary	2.011	Climate Change, Precipitation and Impacts on an Estuarine Refuge from Disease	Author(s): Allam, B., Doall, M., Levinton, J.S., Ralston, D., Starke, A. Grant Number(s): 006/07A Title: Climate Change, Precipitation and Impacts on an Estuarine Refuge from Disease Year: 2011 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Other Invertebrates Subject: Summary: We examined growth, reproduction, and survival of oysters in the New York Harbor- Hudson River region, focusing on a low-salinity refuge in the estuary. Observations were during two years when rainfall was above average and comparable to projected future increases in precipitation in the region and a past period of about 15 years with high precipitation. We found a clear tradeoff between oyster growth and vulnerability to disease. Oysters survived well when exposed to intermediate salinities during two summers (2008, 2010) with moderate discharge conditions. However, increased precipitation and discharge in 2009 reduced salinities in the region with suitable benthic habitat, greatly increasing oyster mortality. To evaluate the estuarine conditions over longer periods, we applied a numerical model of the Hudson to simulate salinities over the past century. Model results suggest that much of the region with suitable benthic habitat that historically had been a low salinity refuge region may be vulnerable to higher mortality under projected increases in precipitation and discharge.
Butler, T.J.	005/98A	Dynamics of Food Webs	Ecosystem Processes	Cornell University	Lower Estuary	2.000	Climatic Control on Eutrophication of the Hudson River Estuary	Author(s): Butler, T.J., Howarth, R.W., Marino, R., Swaney, D.P. Grant Number(s): 005/98A Title: Climatic Control on Eutrophication of the Hudson River Estuary Year: 2000 Organization: Cornell University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Results of research that shows that eutrophication and primary production in the Hudson River Estuary can increase dramatically in response to climatic variation and lowered freshwater discharge from the watershed.
Courtenay, S.C.	013/01A	Toxic Substances	PCBs	NYU Medical Center	Lower Estuary	2.005	Co-exposure to metals modulatesnext term CYP1A mRNA inducibility in Atlantic tomcod Microgadus tomcod from two populations	Author(s): Courtenay, S.C., Roy, N.K., Sorrentino, C., Wirgin, I.I. Grant Number(s): 013/01A Title: Co-exposure to metals modulatesnext term CYP1A mRNA inducibility in Atlantic tomcod Microgadus tomcod from two populations Year: 2005 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: Used hepatic CYP1A mRNA inducibility in tomcod from the Hudson River and a sensitive population to investigate the effects of acute co-exposure to metals on aryl hydrocarbon receptor (AHR)-mediated gene expression.
Caraco, N.F.	002/93A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.997	CO2 Concentration and Atmospheric Flux in the Hudson River	Author(s): Caraco, N.F., Cole, J.J., Raymond, P.A. Grant Number(s): 002/93A Title: CO2 Concentration and Atmospheric Flux in the Hudson River Year: 1997 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Measurements of the partial pressure of CO2 in the tidal-freshwater portion of the Hudson are presented. At all times the Hudson was supersaturated with respect to the atmosphere.
Camargo, S.J.	004/12E	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Univ of Massachusetts, Amherst	Lower Estuary	2.013	Coastal flooding by tropical cyclones and sea-level rise	Author(s): Camargo, S.J., Irish, J.L., Woodruff, J.D. Grant Number(s): 004/12E Title: Coastal flooding by tropical cyclones and sea-level rise Year: 2013 Organization: Univ of Massachusetts, Amherst Pages: 44-52 Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: The future impacts of climate change on landfalling tropical cyclones are unclear. Regardless of this uncertainty, flooding by tropical cyclones will increase as a result of accelerated sea-level rise. Under similar rates of rapid sea-level rise during the early Holocene epoch most low-lying sedimentary coastlines were generally much less resilient to storm impacts. Society must learn to live with a rapidly evolving shoreline that is increasingly prone to flooding from tropical cyclones. These impacts can be mitigated partly with adaptive strategies, which include careful stewardship of sediments and reductions in human-induced land subsidence.
Juanes, F.	TP/07/08	Resource/Key Species	Bluefish	Univ of Massachusetts, Amherst	Lower Estuary	2.009	Cohort Structure, Growth, and Energy Dynamics of Juvenile Bluefish in the Hudson River Estuary	Author(s): Juanes, F., Stormer, D.G. Grant Number(s): TP/07/08 Title: Cohort Structure, Growth, and Energy Dynamics of Juvenile Bluefish in the Hudson River Estuary Year: 2009 Organization: Univ of Massachusetts, Amherst Pages: 26 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Bluefish Subject: Summary: In this study, the cohort structure of juvenile bluefish was investigated during summer residency in the Hudson River estuary by determining individual hatch-dates and examining length-frequency distributions. Growth rates and lipid content of white muscle were compared between the spring- and summer-spawned cohorts of juvenile bluefish through the summer of 2008.
Docherty, K.M.	TP/02/00	Toxic Substances	Pathogens	Marist College	Entire Estuary	2.001	Coliphage in the Hudson River as Agents of Coliform Mortality and Indicators of Water Quality	Author(s): Docherty, K.M., Kepner, Jr., R.L. Grant Number(s): TP/02/00 Title: Coliphage in the Hudson River as Agents of Coliform Mortality and Indicators of Water Quality Year: 2001 Organization: Marist College Pages: 25 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, Pathogens Subject: Summary: This study focused on the enumeration of total and infective viruses from the Hudson River and select Hudson River tributaries.
Docherty, K.M.	011/00A	Toxic Substances	UNKNOWN	Marist College	Freshwater Tidal	2.002	Coliphage in Two Hudson River Tributaries	Author(s): Docherty, K.M., Kepner, Jr., R.L., Leach, L.H. Grant Number(s): 011/00A Title: Coliphage in Two Hudson River Tributaries Year: 2002 Organization: Marist College Pages: 16 Publication: HRF, manuscript River Segment: Freshwater Tidal Area of Interest: Toxic Substances, UNKNOWN Subject: Summary: This research focuses on the enumeration of viruses and bacteria from the Hudson River and two of its tributaries using several methods.
Findlay, S.E.G.	TP/06/86	Resource/Key Species	Other Invertebrates	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.987	Colonization of Artificial Substrate by the Chironomidae (Diptera) of Tivoli South Bay	Author(s): Findlay, S.E.G., Wagner, B. Grant Number(s): TP/06/86 Title: Colonization of Artificial Substrate by the Chironomidae (Diptera) of Tivoli South Bay Year: 1987 Organization: Cary Inst. Of Ecosystem Studies Pages: 30 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Other Invertebrates Subject: Summary: This study reports on the colonization of artificial substrates by larval chironomids in Tivoli South Bay.
						1.992	Commercial Fishing Oral History Project	Author(s): Grant Number(s): Title: Commercial Fishing Oral History Project Year: 1992 Organization: Pages: Publication: HRF, Audio/Visual River Segment: Area of Interest: , Subject: Summary: This is a recorded oral presentation of the traditions and lore of the fishing industry along the Hudson River. This is an interview with Robert Brestolli of Haverstraw, NY on April 25, 1992.
Kiviat, E.	022/86B/016	Resource/Key Species	Biological Communities	Hudsonia Limited	Freshwater Tidal	1.988	Communities of Larvae and Juvenile Fish Associated with Water-Chestnut, watermilfoil and water-celery in the Tivoli Bays of the Hudson River	Author(s): Kiviat, E., Schmidt, R.E. Grant Number(s): 022/86B/016 Title: Communities of Larvae and Juvenile Fish Associated with Water-Chestnut, watermilfoil and water-celery in the Tivoli Bays of the Hudson River Year: 1988 Organization: Hudsonia Limited Pages: 35 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: A study of young fish populations associated with water chestnut stands.
Woolcott, William S.						1.955	Comparative Osteology of Serranid Fishes of the Genus Morone (Mitchill) and Infraspecific Variation in Morone americana (GMELIN)	Author(s): Woolcott, William S. Grant Number(s): Title: Comparative Osteology of Serranid Fishes of the Genus Morone (Mitchill) and Infraspecific Variation in Morone americana (GMELIN) Year: 1955 Organization: Pages: 92 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: A PhD dissertation describing sytematics of the genus Morone, classification based upon external as well as osteological categories was conducted.
Benson, W.	010/98A	Toxic Substances	Effects of Toxic Substances	Univ. of Mississippi	Lower Estuary	2.000	Comparative vitellogenic responses in three teleost species: extrapolation to In situ field studies	Author(s): Benson, W., Schlenk, D., Thompson, S., Tilton, F. Grant Number(s): 010/98A Title: Comparative vitellogenic responses in three teleost species: extrapolation to In situ field studies Year: 2000 Organization: Univ. of Mississippi Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Induction of vitellogenin (VTG) was compared among three telostean species to determine their relative sensitivity of exposure to 17_-estradiol (E2).
Dueker, M.E.	007/13A	Toxic Substances	Pathogens	Queens College, CUNY	Lower Estuary	2.018	Comparison of Bacterial Diversity in Air and Water of a Major Urban Center	Author(s): Dueker, M.E., French, S., O'Mullan, G.D. Grant Number(s): 007/13A Title: Comparison of Bacterial Diversity in Air and Water of a Major Urban Center Year: 2018 Organization: Queens College, CUNY Pages: 13 Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Pathogens Subject: Summary: The interaction of wind with aquatic and terrestrial surfaces is known to control the creation of microbial aerosols allowing for their entrainment into air masses that can be transported regionally and globally. Near surface interactions between urban waterways and urban air are understudied but some level of interaction among these bacterial communities would be expected and may be relevant to understanding both urban air and water quality. To address this gap related to patterns of local air-water microbial exchange, we utilized next-generation sequencing of 16S rRNA genes from paired air and water samples collected from 3 urban waterfront sites and evaluated their relative bacterial diversity.
Austin, K.H.	TP/04/86	Dynamics of Food Webs	Ecosystem Processes	University of Georgia	Entire Estuary	1.990	Comparison of Detritus Dynamics in Two Tidal Freshwater Wetlands	Author(s): Austin, K.H., Findlay, S.E.G., Howe, K. Grant Number(s): TP/04/86 Title: Comparison of Detritus Dynamics in Two Tidal Freshwater Wetlands Year: 1990 Organization: University of Georgia Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: This article is an examination of persistence of detritus in two contrasting tidal freshwater wetlands on the Hudson River.
Bauer, J.E.	GF/03/00	Dynamics of Food Webs	Ecosystem Processes	V.I.M.S.	Freshwater Tidal	2.001	Comparison of DOM cycling between tidal freshwater Hudson and York Rivers: an evaluation of the fractions, sources and ages of DOM fueling bacterial production	Author(s): Bauer, J.E., Ducklow, H.W., McCallister, S.L. Grant Number(s): GF/03/00 Title: Comparison of DOM cycling between tidal freshwater Hudson and York Rivers: an evaluation of the fractions, sources and ages of DOM fueling bacterial production Year: 2001 Organization: V.I.M.S. Pages: 9 Publication: HRF, thesis River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: This study was specifically designed to examine the fraction of DOC, DON, and DOP remineralized in the freshwater part of the Hudson and York River estuaries and to elucidate the autochthonous sources fueling bacterial production.
Gilchrest, W.R.	TP/09/97	Dynamics of Food Webs	Ecosystem Processes	Norrie Point Env Ctr	Entire Estuary	1.998	Comparison of Fish Communities in Open and Occluded Freshwater Tidal Wetlands in the Hudson River Estuary	Author(s): Gilchrest, W.R., Schmidt, R.E. Grant Number(s): TP/09/97 Title: Comparison of Fish Communities in Open and Occluded Freshwater Tidal Wetlands in the Hudson River Estuary Year: 1998 Organization: Norrie Point Env Ctr Pages: 17 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Original nearshore fish community data was collected using beach seines in open shallows and pop nets in Trapa natans beds in the freshwater tidal Hudson River at Norrie Point and Tivoli South Bay to determine if the occlusion by the railroad bridges caused a difference in the fish community structure in these areas.
Courtenay, S.C.	013/01A	Toxic Substances	PCBs	NYU Medical Center	Lower Estuary	2.006	Comparison of hepatic and extra hepatic induction of cytochrome P4501A by graded doses of aryl hydrocarbon receptor agonists in Atlantic tomcodnext term from two populations	Author(s): Courtenay, S.C., Wirgin, I.I., Yuan, Z. Grant Number(s): 013/01A Title: Comparison of hepatic and extra hepatic induction of cytochrome P4501A by graded doses of aryl hydrocarbon receptor agonists in Atlantic tomcodnext term from two populations Year: 2006 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, PCBs Subject: Summary: Determine if CYP1A mRNA was inducible with higher doses of these and other halogenated aromatic hydrocarbons (HAHs) in Hudson River previous termtomcodnext term and if decreased sensitivity to gene inducibility occurs across all tissues.
Limburg, K.E.	003/09A	Resource/Key Species	River Herring	SUNY, Enviro. Sci. & Forestry	Entire Estuary	2.012	Comparison of Juvenile Alewife Growth and Movement in a Large and a Small Watershed	Author(s): Limburg, K.E., Turner, S.M. Grant Number(s): 003/09A Title: Comparison of Juvenile Alewife Growth and Movement in a Large and a Small Watershed Year: 2012 Organization: SUNY, Enviro. Sci. & Forestry Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, River Herring Subject: Summary: Otolith chemistry and daily growth increments of Peconic River alewives (small watershed) and Hudson River alewives (large watershed) were compared to aid in investigating variables influencing juvenile alewife growth, behavior, and survival in different sized watersheds.
Capone, D.G.	014/83B/12	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.988	Comparison of Microbial Dynamics in Marine and Freshwater Environments: Contrasts in Anaerobic Catabolism	Author(s): Capone, D.G., Kiene, R. Grant Number(s): 014/83B/12 Title: Comparison of Microbial Dynamics in Marine and Freshwater Environments: Contrasts in Anaerobic Catabolism Year: 1988 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A paper on the subject stated in title.
Baldevarona, R.B.	001/87R/001	Resource/Key Species	Striped Bass	Univ. of South Carolina	Entire Estuary	1.989	Comparison of otolith growth and somatic growth in larval and juvenile fishes based on otolith length/fish length relationships	Author(s): Baldevarona, R.B., Dean, J.M., Secor, D.H. Grant Number(s): 001/87R/001 Title: Comparison of otolith growth and somatic growth in larval and juvenile fishes based on otolith length/fish length relationships Year: 1989 Organization: Univ. of South Carolina Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: Study shows that short-term otolith growth was not linearly related to somatic growth.
Brownawell, B.J.	TP/03/95	Toxic Substances	Fate & Transport of Toxic Substances	Q.E.A.	Entire Estuary	1.996	Comparison of the Relative Desorption and Bioavailabity of Polychlorinated Biphenyls, Polycyclic Aromatic Hydrocarbons, and Linea Alkylbenzenes from Hudson River Sediments	Author(s): Brownawell, B.J., Lamoureux, E.M. Grant Number(s): TP/03/95 Title: Comparison of the Relative Desorption and Bioavailabity of Polychlorinated Biphenyls, Polycyclic Aromatic Hydrocarbons, and Linea Alkylbenzenes from Hudson River Sediments Year: 1996 Organization: Q.E.A. Pages: 18 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Using sediment collected from a site near Governor's Island, experiments were designed to investigate the probable correlation of desorption of sediment-associated contaminants in aqueous media with their bioaccumulation and determine whether a sediment process known as "aging" affects the relative desorption and bioavailability of sediment-associated nonionic organic contaminants by comparing the desorption and bioaccumulation of contaminants collected from different core intervals.
Holland, M.M.	TP/01/85	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	College of New Rochelle	Freshwater Tidal	1.986	Comparison of Vascular Plant Zonation at Iona Island Marsh (Hudson river Estuary) and Lord's Cove Marsh (Connecticut River Estuary)	Author(s): Holland, M.M., Reilly, A., Senerchia-Nardone, P. Grant Number(s): TP/01/85 Title: Comparison of Vascular Plant Zonation at Iona Island Marsh (Hudson river Estuary) and Lord's Cove Marsh (Connecticut River Estuary) Year: 1986 Organization: College of New Rochelle Pages: 33 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: This study documents zonation patterns of vascular plants in two brackish tidal wetlands within the estuaries of two major northeastern rivers.
Giambanco, M.R.	002/00A	Resource/Key Species	Reptiles & Amphibians	Hofstra University	Lower Estuary	2.000	Comparison of Viability Rates, Hatching Survivorship, and Sex Ratios of Laboratory- and Field -Incubated Nests of the Estuarine, Emydid Turtle Malaclemys terrapin	Author(s): Giambanco, M.R. Grant Number(s): 002/00A Title: Comparison of Viability Rates, Hatching Survivorship, and Sex Ratios of Laboratory- and Field -Incubated Nests of the Estuarine, Emydid Turtle Malaclemys terrapin Year: 2000 Organization: Hofstra University Pages: 82 Publication: HRF, thesis River Segment: Lower Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: Research study into the viability rates, hatchling survivorship and sex ratios of Jamaica Bay Diamondback Terrapins
Courtenay, S.C.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	2.000	Competetive RT-PCR Analysis of Cytochrome P4501A1 Expression in Atlantic Tomcod Larvae	Author(s): Courtenay, S.C., Roy, N.K., Wirgin, I.I. Grant Number(s): 011/94A Title: Competetive RT-PCR Analysis of Cytochrome P4501A1 Expression in Atlantic Tomcod Larvae Year: 2000 Organization: NYU Medical Center Pages: 14 pp (manuscript) Publication: HRF, manuscript River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Expression of a gene related to exposure to contaminants was measured in larval tomcod.
Reyes, N.	TP/04/89	Dynamics of Food Webs	Ecosystem Processes	Louis Calder Ecology Center	Entire Estuary	1.990	Composition of Planktonic Rotifer Fauna and Temporal Variation in the Abundance of Rotifers and Their Food Supply in the Hudson River	Author(s): Reyes, N., Wehr, J.D. Grant Number(s): TP/04/89 Title: Composition of Planktonic Rotifer Fauna and Temporal Variation in the Abundance of Rotifers and Their Food Supply in the Hudson River Year: 1990 Organization: Louis Calder Ecology Center Pages: 11 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: This study examined 18 species of rotifers identified from samples collected over the summer of 1989 from the Hudson River at a station near Kingston, New York. Abundances of rotifer taxa, as well as those of other groups of planktonic grazers were examined.
Findlay, S.E.G.	TP/05/87	Resource/Key Species	Other Invertebrates	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.988	Composition, Abundamce, and Dynamics of Macroinvertebrates in Tivoli South Bay, with Empasis on the Chironomidae (Diptera)	Author(s): Findlay, S.E.G., Schoeberl, K.L. Grant Number(s): TP/05/87 Title: Composition, Abundamce, and Dynamics of Macroinvertebrates in Tivoli South Bay, with Empasis on the Chironomidae (Diptera) Year: 1988 Organization: Cary Inst. Of Ecosystem Studies Pages: 18 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Other Invertebrates Subject: Summary: The benthic and epiphytic fauna of Tivoli South Bay, a freshwater tidal wetland on the Hudson River, New York, were studied from Aptril to August 1987.
Elskus, A.A.	004/97A	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Lower Estuary	2.001	Compound class specific evaluation of hydrophobic organic contaminants from sediment in teh Hudson-Raritan estuary	Author(s): Elskus, A.A., McElroy, A.E. Grant Number(s): 004/97A Title: Compound class specific evaluation of hydrophobic organic contaminants from sediment in teh Hudson-Raritan estuary Year: 2001 Organization: SUNY at Stony Brook Pages: 3 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: An Amberlite XAD-4 polymeric resin technique was used to independently evaluate the contribution of easily desorbable hydrophobic organic contaminants to overall sediment toxicity.
Wainright, S.	002/95A	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	SUNY at Stony Brook	Lower Estuary	1.997	Concentrations of organic matter, chlorophyll, nutrients, dissolved oxygen, and total CO2 and their advective fluxes across the mouth of the Hudson R	Author(s): Wainright, S. Grant Number(s): 002/95A Title: Concentrations of organic matter, chlorophyll, nutrients, dissolved oxygen, and total CO2 and their advective fluxes across the mouth of the Hudson R Year: 1997 Organization: SUNY at Stony Brook Pages: 34 Publication: HRF, manuscript River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: Measurements of current velocity, dissolved nutrients, dissolved gases and concentrations of organic matter used to determine fluxes across the entrance to the estuary.
Bush, B.	016/90A/042	Toxic Substances	PCBs	NYS Department of Health	Upper Hudson River	1.995	Congener Concentration and Profile of Sediment PCBs and Dechlorination and Biodegradation by Anaerobes: Project Summary	Author(s): Bush, B., Rhee, G-Y., Grant Number(s): 016/90A/042, Title: Congener Concentration and Profile of Sediment PCBs and Dechlorination and Biodegradation by Anaerobes: Project Summary Year: 1995 Organization: NYS Department of Health Pages: 1 page Publication: HRF, report River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: A summary of research conducted to determine the extent to which PCBs in Hudson River sediments are dechlorinated and otherwise degraded by microorganisms.
Dueker, M.E.						2.011	Connecting Hudson River Estuary water quality to microbial aerosols at the urban waterfront	Author(s): Dueker, M.E. Grant Number(s): Title: Connecting Hudson River Estuary water quality to microbial aerosols at the urban waterfront Year: 2011 Organization: Pages: Publication: HRF, report River Segment: Area of Interest: , Subject: Summary:
Erickson, J.D.	010/00A	Public Policy	Public Policy	Rensselaer Polytechnic Inst.	Watershed	2.009	Connecting the ecological-economic dots in human-dominated watersheds: Models to link socio-economic activities on the landscape to stream ecosystem health	Author(s): Erickson, J.D., Gowdy, J.M., Hong, B., Limburg, K.E., Nowosielski, A.A, Polimeni, J.M., Stainbrook, K.M. Grant Number(s): 010/00A Title: Connecting the ecological-economic dots in human-dominated watersheds: Models to link socio-economic activities on the landscape to stream ecosystem health Year: 2009 Organization: Rensselaer Polytechnic Inst. Pages: Publication: HRF, peer review piece River Segment: Watershed Area of Interest: Public Policy, Public Policy Subject: Summary: We present an interdisciplinary modeling framework to investigate howhuman socio-economic activities influence the spatial pattern of urbanization, and how consequent changes in land use affectwater quality and stream ecosystem condition. The framework is composed of three submodels considering (1) the social and economic structures based upon a social accounting matrix, (2) land use change and urban sprawl based upon a binary logit regression, and (3) stream ecosystem condition in the catchment area based upon the NAWQA (NationalWater Quality Assessment) dataset.We applied our integrated model to Dutchess County, NewYork, USA, as a case study. Our study, in spite of its limitations and uncertainties, demonstrates the importance of a quantitative holistic approach in linking human and natural systems and estimating tradeoffs between economic benefits and environmental quality.
McBride, R.S.	TP/06/94	Resource/Key Species	Other Fish	Fl Marine Research Institute	Entire Estuary	2.000	Consequences of dispersal of subtropically spawned crevalle jacks, Caranx hippos, to temperate estuaries	Author(s): McBride, R.S., McKown, K.A. Grant Number(s): TP/06/94 Title: Consequences of dispersal of subtropically spawned crevalle jacks, Caranx hippos, to temperate estuaries Year: 2000 Organization: Fl Marine Research Institute Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Other Fish Subject: Summary: Evaluated whether reparticipation of C. hippos was possible after spawning migration.
Naczi, R.F.C.	001/12E	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	The New York Botanical Garden	Entire Estuary	2.013	Conservation Assessment of Intertidal Vascular Plants of the Hudson River	Author(s): Naczi, R.F.C. Grant Number(s): 001/12E Title: Conservation Assessment of Intertidal Vascular Plants of the Hudson River Year: 2013 Organization: The New York Botanical Garden Pages: Publication: HRF, report River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: Intertidal zones of the Hudson River estuary constitute habitats that host rare vascular plant species of conservation concern. Based on the findings of this project, recommendations are being made for conservation of specific critical habitats, priorities for restoration of species, and priorities for restoration of specific intertidal sites.
Naczi, R.F.C.	003/14E	Dynamics of Food Webs	Wetlands & Submerged Aquatic Vegetation	The New York Botanical Garden	Entire Estuary	2.016	Conservation of Intertidal Vascular Platns of the Hudson River Estuary	Author(s): Naczi, R.F.C. Grant Number(s): 003/14E Title: Conservation of Intertidal Vascular Platns of the Hudson River Estuary Year: 2016 Organization: The New York Botanical Garden Pages: 8 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Wetlands & Submerged Aquatic Vegetation Subject: Summary: Intertidal zones of the Hudson River estuary constitute habitats that host rare vascular plant species of conservation concern. These species are restricted or nearly restricted to intertidal habitats, and several grow only in the northeastern USA. Grave threats challenge the survival of these species, including pollution and invasive species. Because of the narrow ecologic and geographic specificity of intertidal-restricted plant species, one would expect them to be the most sensitive of all plants in the Hudson River Estuary, and thus the best botanical indicators of environmental health.
Arend, K.K.	010/93A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Lower Estuary	1.997	Consumption, Selectivity, and Use of Zooplankton by Larval Striped Bass and White Perch in a Seasonally Pulsed Estuary	Author(s): Arend, K.K., Fischer, D.T., Limburg, K.E., Pace, M.L. Grant Number(s): 010/93A Title: Consumption, Selectivity, and Use of Zooplankton by Larval Striped Bass and White Perch in a Seasonally Pulsed Estuary Year: 1997 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The potential growth and survival advantage to larval fishes associated with phytoplankton and zooplankton blooms in the Hudson River was investigated. It was demonstrated that cohorts coincident with the blooms had intermediate consumption rates and metabolic costs relative to pre- and post-bloom cohorts. An energetic advantage only exists relative to the pre-bloom cohort and not to the post-bloom cohort.
Douglas, S.						2.006	Contamination Assessment and Reduction Project	Author(s): Douglas, S., Litten, S., Lodge, J., Miller, R.L, Suszkowski, D.J. Grant Number(s): Title: Contamination Assessment and Reduction Project Year: 2006 Organization: Pages: 46 Publication: HRF, published by River Segment: Area of Interest: , Subject: Summary: A summary of all the activities conducted under CARP and a brief overview of the data and modeling results.CARP identifies and quantifies sources of contaminants of concern to the NY/NJ Harbor Estuary from a dredged material standpoint.
Cormier, S.M.	004/86A/013	Toxic Substances	Effects of Toxic Substances	University of Louisville	Entire Estuary	1.989	Continued evaluation of the Atlantic tomcod as an assay for chemical carcinogens in the Hudson River	Author(s): Cormier, S.M. Grant Number(s): 004/86A/013 Title: Continued evaluation of the Atlantic tomcod as an assay for chemical carcinogens in the Hudson River Year: 1989 Organization: University of Louisville Pages: 18 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Examined juvenile and year old Atlantic tomcod in Hudson and Maine rivers for hepatocellular carcinoma.
Caraco, N.F.	002/99A	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	2.002	Contrasting Impacts of a Native and Alien Macrophyte on Dissolved Oxygen in a Large River	Author(s): Caraco, N.F., Cole, J.J. Grant Number(s): 002/99A Title: Contrasting Impacts of a Native and Alien Macrophyte on Dissolved Oxygen in a Large River Year: 2002 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Here we use empirical data and modeling to explore the hypothesis that the introduction of an alien aquatic macrophyte (Trapa natans) may have had dramatic impacts on the frequency and extent of low DO events in the Hudson River.
Buckel, J.A.	006/98A	Resource/Key Species	Bay Anchovy	University of Massachusetts	Lower Estuary	2.009	Contrasting patterns of resource utilization between juvenile estuarine predators: the influence of relative prey size and foraging ability on the ontogeny of piscivory	Author(s): Buckel, J.A., Juanes, F., Scharf, F.S. Grant Number(s): 006/98A Title: Contrasting patterns of resource utilization between juvenile estuarine predators: the influence of relative prey size and foraging ability on the ontogeny of piscivory Year: 2009 Organization: University of Massachusetts Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Bay Anchovy Subject: Summary: In aquatic systems, ontogenetic patterns of resource utilization strongly influence growth and survival, particularly during early life stages. We compared prey resource use and evaluated potential factors affecting the timing of the shift to piscivorous feeding in two juvenile estuarine fish predators: striped bass (Morone saxatilis) and bluefish (Pomatomus saltatrix). In New York Bight estuaries, bluefish shift to piscivory earlier in ontogeny and consume larger relative prey fish sizes compared with striped bass. Predator gape allometries are similar and did not determine maximum prey sizes eaten. Experimental results revealed marked differences in foraging abilities between predators, with bluefish realizing much greater foraging efficiency compared with striped bass feeding on identical fish prey. Both predators demonstrated lower feeding efficiency and grew relatively poorly when feeding on invertebrates compared with fish prey. When held together under limited prey conditions, bluefish exploited a greater proportion of available prey at the expense of striped bass. Our findings highlight the importance of the availability of appropriately sized forage fishes to the ontogeny of piscivory and provide evidence that predator-prey size relationships and disparate foraging abilities can generate inter- and intra-specific variation in patterns of resource utilization and predator growth.
Longworth, B.E.	GF/04/03	Dynamics of Food Webs	Ecosystem Processes	University of Massachusetts	Entire Estuary	2.004	Contribution of Ancient Organic Matter to a Modern Riverine Carbon Cycle: The Hudson-Mohawk River System, New York, USA	Author(s): Longworth, B.E. Grant Number(s): GF/04/03 Title: Contribution of Ancient Organic Matter to a Modern Riverine Carbon Cycle: The Hudson-Mohawk River System, New York, USA Year: 2004 Organization: University of Massachusetts Pages: 3 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Results of water, soil and sediment samples collected from fourteen upstate New York streams.
Able, K.W.	001/92B	Resource/Key Species	Biological Communities	Rutgers University	Lower Estuary	1.994	Contributions of Abiotic and Biotic Factors to Settlement in Summer Flounder, Paralichthys dentatus	Author(s): Able, K.W., Keefe, M.L. Grant Number(s): 001/92B Title: Contributions of Abiotic and Biotic Factors to Settlement in Summer Flounder, Paralichthys dentatus Year: 1994 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: Studies the impact of different substrates on juvenile and metamorphic summer flounder
Junkins, R.A.	006/03A	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	2.006	Contributions of adult oligochaete emigration and immigration in a dynamic soft-sediment community	Author(s): Junkins, R.A., Kelaher, B.P., Levinton, J.S. Grant Number(s): 006/03A, 013/00A Title: Contributions of adult oligochaete emigration and immigration in a dynamic soft-sediment community Year: 2006 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: It is well known that adult dispersal is common in soft bottom intertidal and shallow subtidal communities. We here report on the first study that attempts to quantify the effects of both immigration and emigration on patches of soft sediment communities. Some species show adaptive emigration from the seabed, although dispersal direction, distance, and colonization success are probably strongly dependent on hydrodynamics, morphological adaptations to dispersal, and the ability to select appropriate target microsites.
Fuhrman, J.A.	004/85A/023	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.988	Control of marine bacterioplankton populations: measurement and significance of grazing	Author(s): Fuhrman, J.A., McManus, G.B. Grant Number(s): 004/85A/023 Title: Control of marine bacterioplankton populations: measurement and significance of grazing Year: 1988 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: Measurments of bacterial and bacterivore abundance, concentrated on comparisons between seasons, on diel cycles and on spatial variations have been used to evaluate mechanisms controlling bacterial populations.
Bauer, J.E.	GF/04/03	Dynamics of Food Webs	Ecosystem Processes	University of Massachusetts	Entire Estuary	2.004	Controls on the variability of organic matter and dissolved inorganic carbon ages in northeast US rivers	Author(s): Bauer, J.E., Caraco, N.F., Cole, J.J., Longworth, B.E., Petsch, S.T., Raymond, P.A. Grant Number(s): GF/04/03 Title: Controls on the variability of organic matter and dissolved inorganic carbon ages in northeast US rivers Year: 2004 Organization: University of Massachusetts Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The use of natural 14C in aquatic and marine studies provides unique source, turnover and processing information with respect to local, regional and global carbon budgets. The number of 14C analyses in many aquatic ecosystems is small, however, thus limiting the full potential of 14C as a tool in carbon studies in these systems. This is particularly true for rivers, which form key linkages between terrestrial and oceanic systems. As part of our on-going studies, radiocarbon-based measurements of dissolved and particulate organic carbon (DOC and POC, respectively), as well as dissolved inorganic carbon (DIC), are being conducted in a group of northeast US rivers.
Biewald, B.	007/92A	Public Policy	Public Policy	Scenic Hudson, Inc.	Entire Estuary	1.993	Cooling Towers for Hudson River Power Plants: Economic and Environmental Considerations	Author(s): Biewald, B., Lee, C., Singh, D. Grant Number(s): 007/92A Title: Cooling Towers for Hudson River Power Plants: Economic and Environmental Considerations Year: 1993 Organization: Scenic Hudson, Inc. Pages: 54 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: The purpose of this study was to determine the environmental impacts associated with electrical power generation along the Hudson.
Fields, D.	012/90A/032	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.995	Copepod Egg Production in Long Island Sound, USA, as a Function of the Chemical Composition of Seston	Author(s): Fields, D., Jonasdottir, S.H., Pantoja, S. Grant Number(s): 012/90A/032 Title: Copepod Egg Production in Long Island Sound, USA, as a Function of the Chemical Composition of Seston Year: 1995 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: The effect of the chemical composition of seston on the egg production rates of copepods was studied in Long Island Sound.
Jarvinen, D.	008/99A	Public Policy	Public Policy	Woods Hole Oceanographic Inst.	Entire Estuary	2.000	Cost-effective reduction of PCB contamination in the Hudson River and estuary	Author(s): Jarvinen, D. Grant Number(s): 008/99A Title: Cost-effective reduction of PCB contamination in the Hudson River and estuary Year: 2000 Organization: Woods Hole Oceanographic Inst. Pages: 41 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Public Policy, Public Policy Subject: Summary: Scenarios testing physical model of PCB fate and transport in the Hudson RIver and its estuary into a cost-effectiveness analysis of remediation alternatives.
Levinton, J.S.	TP/01/94	Toxic Substances	Effects of Toxic Substances	SUNY Stony Brook	Entire Estuary	1.995	Costs of Adaptation to Cadmium in Limnodrilus hoffmeisteri, a Common Hudson River Invertebrate	Author(s): Levinton, J.S., Montero, C. Grant Number(s): TP/01/94 Title: Costs of Adaptation to Cadmium in Limnodrilus hoffmeisteri, a Common Hudson River Invertebrate Year: 1995 Organization: SUNY Stony Brook Pages: 8 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Growth, as well as reproduction experiments were conducted with Limnodrilus hoffmeisteri from metal-free (South Cove) and metal-rich (Foundry Cove) areas in order to test the hypothesis that there are costs associated with the evolution of resistance to metals.
Corlett, W.B.	GF/01/17	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	Woods Hole Oceanographic Inst.	Lower Estuary	2.018	Coupled Dynamics and Sediment Transport in a Human-modified Estuarine Network	Author(s): Corlett, W.B., Geyer, W.R. Grant Number(s): GF/01/17 Title: Coupled Dynamics and Sediment Transport in a Human-modified Estuarine Network Year: 2018 Organization: Woods Hole Oceanographic Inst. Pages: 21 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: This report describes the results of Hudson River Foundation Mark B. Bain graduate fellowship, which was awarded to study the effects of bathymetric change on the dynamics and sediment transport of the Newark Bay estuarine network.
Baker, J.E.	001/97A	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Lower Estuary	1.999	Coupling of Phytoplankton Uptake and Air - Water Exchange of Persistent Organic Pollutants	Author(s): Baker, J.E., Dachs, J., Eisenreich, S.J., Jeremiason, J.D., Ko, F-C Grant Number(s): 001/97A Title: Coupling of Phytoplankton Uptake and Air - Water Exchange of Persistent Organic Pollutants Year: 1999 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: A sensitivity analysis of the air-water exchange and phytoplankton uptake of PCBs models, taking into account the influence of physical environmental conditions such as temperature, wind speed, and mixing depth as well as plankton reltated parameters such as biomass and growth rate, was carried out for a number of PCBs with different physical-chemical properties.
Brownawell, B.J.	013/99A	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Lower Estuary	2.000	Critical Body Residues in the Marine Amphipod Ampelisca abdita: Sediment Exposures with Nonionic Organic Contaminants	Author(s): Brownawell, B.J., Elskus, A.A., Fay, A.A., McElroy, A.E. Grant Number(s): 013/99A Title: Critical Body Residues in the Marine Amphipod Ampelisca abdita: Sediment Exposures with Nonionic Organic Contaminants Year: 2000 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: Concentrations of contaminants in amphipods that had been exposed to toxic sediments were measured.
Strayer, D.L.	014/86A/055	Resource/Key Species	Biological Communities	Cary Inst. Of Ecosystem Studies	Watershed	1.988	Crustaceans and mites (Acari) from Hyporheic and other underground waters in southeastern New York	Author(s): Strayer, D.L. Grant Number(s): 014/86A/055 Title: Crustaceans and mites (Acari) from Hyporheic and other underground waters in southeastern New York Year: 1988 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Watershed Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: The life cycles of four species of copepods and a halacarid are described.
Dueker, M.E.	007/13A	Toxic Substances	Pathogens	Queens College, CUNY	Lower Estuary	2.016	Culturable bioaerosols along an urban waterfront are primarily associated with coarse particles	Author(s): Dueker, M.E., Montero, A., O'Mullan, G.D. Grant Number(s): 007/13A Title: Culturable bioaerosols along an urban waterfront are primarily associated with coarse particles Year: 2016 Organization: Queens College, CUNY Pages: 18 Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Toxic Substances, Pathogens Subject: Summary: In this study, we utilize a cascade impactor and aerosol particle monitor to characterize the size distribution of particles and culturable bacterial and fungal aerosols along the waterfront of a New York City embayment. We seek to address the potential contribution of bacterial aerosols from local sources and to determine how their number, size distribution, and taxonomic identity are affected by wind speed and wind direction (onshore vs. offshore).
Schmidt, R.E.	019/83B/62	Education	Curation & Exhibition	American Museum of Natural Hist.	Entire Estuary	1.985	Curation of the American Museum of Natural History Hudson River Larval Fish Collection	Author(s): Schmidt, R.E., Smith, C.L. Grant Number(s): 019/83B/62 Title: Curation of the American Museum of Natural History Hudson River Larval Fish Collection Year: 1985 Organization: American Museum of Natural Hist. Pages: 78 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Education, Curation & Exhibition Subject: Summary: The background and contents of the American Museum of Natural History's collection of Hudson River Larval Fish.
McDonough, C.A.	GF/03/16	Toxic Substances	Fate & Transport of Toxic Substances	University of Rhode Island	Tributaries	2.018	Currently and Recently-Used Persistent Bioaccumulative Toxic Contaminants in Water and Biota from the Passaic River	Author(s): McDonough, C.A. Grant Number(s): GF/03/16 Title: Currently and Recently-Used Persistent Bioaccumulative Toxic Contaminants in Water and Biota from the Passaic River Year: 2018 Organization: University of Rhode Island Pages: 22 Publication: HRF, thesis River Segment: Tributaries Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Here, extracts from biota collected on the Passaic River were retrospectively analyzed for two groups of currently used organic contaminants, the polycyclic musks (PCMs) and novel halogenated flame retardants (NHFRs). Extracts from PEs deployed in surface waters of the river during the same time period were also analyzed.
Chambers, R.C.	011/94A	Toxic Substances	Effects of Toxic Substances	NYU Medical Center	Entire Estuary	2.002	Cytochrome P4501A1 is induced by PCB 77 and benzo[a]pyrene treatment but not by exposure to the Hudson River environment in Atlantic tomcod (Microgadus tomcod) post-yolk sac larvae	Author(s): Chambers, R.C., Courtenay, S.C., Maxwell, G., Roy, N.K., Wirgin, I.I., Yuan, Z. Grant Number(s): 011/94A Title: Cytochrome P4501A1 is induced by PCB 77 and benzo[a]pyrene treatment but not by exposure to the Hudson River environment in Atlantic tomcod (Microgadus tomcod) post-yolk sac larvae Year: 2002 Organization: NYU Medical Center Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: This study demonstrates the feasibility of using competitive RT-PCR for the measurement of gene expression in environmentally exposed larvae of sentinel species, and is consistent with the hypothesis that postlarvae exposed to the Hudson River environment have not bioaccumulated sufficient levels of AHs to induce CYP1A1 expression.
Cole, J.J.	002/08A	Resource/Key Species	Zebra Mussels	Cary Inst. Of Ecosystem Studies	Entire Estuary	2.014	Decadal-Scale Change in a Large-River Ecosystem	Author(s): Cole, J.J., Findlay, S.E.G., Fischer, D.T., Gephart, J.A., Malcom, H.M., Pace, M.L., Rosi-Marshall, E.J., Strayer, D.L. Grant Number(s): 002/08A Title: Decadal-Scale Change in a Large-River Ecosystem Year: 2014 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: This paper uses long-term studies of the Hudson to describe decadal-scale change in its ecosystem. Major impacts on the Hudson in the last few decades include biological invasions, climate change and extreme weather events, and changes in harvests of fishes.
						1.988	Dechlorination and biodegradation of chlorinated biphenyls in anaerobic Hudson River sediments	Author(s): Grant Number(s): Title: Dechlorination and biodegradation of chlorinated biphenyls in anaerobic Hudson River sediments Year: 1988 Organization: Pages: 12 Publication: HRF, report River Segment: Area of Interest: , Subject: Summary: The anaerobic transformation of PCBs was investigated using the congener mixture of Aroclor 1242.
Bethoney, C.M.	021/86B/015	Toxic Substances	PCBs	NYS Department of Health	Upper Hudson River	1.993	Dechlorination of Polychlorinated Biphenyls by Hudson River Sediment Organisms: Specificity to the Chlorination Pattern of Congeners	Author(s): Bethoney, C.M., Bush, B., Rhee, G-Y., Sokol, R.C. Grant Number(s): 021/86B/015, 009/88A/024 Title: Dechlorination of Polychlorinated Biphenyls by Hudson River Sediment Organisms: Specificity to the Chlorination Pattern of Congeners Year: 1993 Organization: NYS Department of Health Pages: Publication: HRF, peer review piece River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: Reductive dechlorination of Polychlorinated biphenyls by Hudson River sediment organisms was investigated using single congeners 2,3,4-, 2,4,5-, and 2,3,4,5,6-chlorobiphenyls.
Alben, K.T.	014/85B/001	Toxic Substances	Fate & Transport of Toxic Substances	NYS Department of Health	Upper Hudson River	1.990	Dechlorination With Sulfur Dioxide Before Adsorption: Design, Operation and Performance of a Pilot-Scale System	Author(s): Alben, K.T., Kaczmarczyk, J.H., Shpirt, E. Grant Number(s): 014/85B/001 Title: Dechlorination With Sulfur Dioxide Before Adsorption: Design, Operation and Performance of a Pilot-Scale System Year: 1990 Organization: NYS Department of Health Pages: Publication: HRF, peer review piece River Segment: Upper Hudson River Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: SO2 was used for dechlorination to inhibit the formation of surface oxides on a granular activated carbon pilot column, which can potentially reduce adsorption capacities for organics.
Strayer, D.	010/13A	Public Policy	Public Policy	Cary Institute of Ecosystem Studies	Freshwater Tidal	2.018	Decision-support tools to improve shore zone management	Author(s): Strayer, D. Grant Number(s): 010/13A Title: Decision-support tools to improve shore zone management Year: 2018 Organization: Cary Institute of Ecosystem Studies Pages: 42 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Public Policy, Public Policy Subject: Summary: The goals of this project were to develop and distribute decision-support tools to help various stakeholders make better decisions about shore zone infrastructure to be built or managed along the Hudson River.
Levinton, J.S.	006/03A	Toxic Substances	Effects of Toxic Substances	SUNY at Stony Brook	Freshwater Tidal	2.007	Declining metal levels at Foundry Cove (Hudson River, New York): Response to localized dreging of contaminated sediments	Author(s): Levinton, J.S., Mackie, J.A., Natali, S.M., Sanudo-Wilhelmy, S.A. Grant Number(s): 006/03A Title: Declining metal levels at Foundry Cove (Hudson River, New York): Response to localized dreging of contaminated sediments Year: 2007 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Toxic Substances, Effects of Toxic Substances Subject: Summary: This study examines the effectiveness of remediating a well-recognized case of heavy metal pollution at Foundry Cove (FC), Hudson River, New York.
Bianchi, T.S.	003/88A/007	Dynamics of Food Webs	Ecosystem Processes	Cary Inst. Of Ecosystem Studies	Freshwater Tidal	1.991	Decomposition of Hudson Estuary Macrophytes: Photosynthetic Pigment Transformations and Decay Constants	Author(s): Bianchi, T.S., Findlay, S.E.G. Grant Number(s): 003/88A/007 Title: Decomposition of Hudson Estuary Macrophytes: Photosynthetic Pigment Transformations and Decay Constants Year: 1991 Organization: Cary Inst. Of Ecosystem Studies Pages: Publication: HRF, peer review piece River Segment: Freshwater Tidal Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: This article discusses plant pigment decay for four macrophytes.
Bokuniewicz, H.J.	015/95A	Hydrodynamics & Sediment Transport	Hydrodynamics & Hydrology	University of Connecticut	Lower Estuary	2.002	Deeping of the Ambrose Channel and the Flow into the Lower Bay of New York Harbor	Author(s): Bokuniewicz, H.J., Lwiza, K.M.M. Grant Number(s): 015/95A Title: Deeping of the Ambrose Channel and the Flow into the Lower Bay of New York Harbor Year: 2002 Organization: University of Connecticut Pages: 1-29 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Hydrodynamics & Hydrology Subject: Summary: Determines the impact of a deepened Ambrose channel on tides and the estuarine circulation
Capone, D.G.	014/83B/12	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.985	Degassing of Pore Water Methane During Sediment Incubations	Author(s): Capone, D.G., Kiene, R. Grant Number(s): 014/83B/12 Title: Degassing of Pore Water Methane During Sediment Incubations Year: 1985 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A paper on the subject stated in title.
Bauer, J.E.	014/83B/12	Dynamics of Food Webs	Ecosystem Processes	SUNY at Stony Brook	Lower Estuary	1.985	Degradation and Mineralization of the Polycyclic Aromatic Hydrocarbons Anthracene and Napthalene in Intertidal Marine Sediments	Author(s): Bauer, J.E., Capone, D.G. Grant Number(s): 014/83B/12 Title: Degradation and Mineralization of the Polycyclic Aromatic Hydrocarbons Anthracene and Napthalene in Intertidal Marine Sediments Year: 1985 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A paper on the subject stated in title.
Haggblom, M.M.	014/89A/056	Toxic Substances	Fate & Transport of Toxic Substances	Rutgers University	Entire Estuary	1.995	Degradation of Monochlorinated and Nonchlorinated Aromatic Compounds under Iron-Reducing Conditions	Author(s): Haggblom, M.M., Kazumi, J., Young, L.Y. Grant Number(s): 014/89A/056 Title: Degradation of Monochlorinated and Nonchlorinated Aromatic Compounds under Iron-Reducing Conditions Year: 1995 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The capacity for Fe31 to serve as an electron acceptor in the microbial degradation of monochlorinated and nonchlorinated aromatic compounds was investigated in anoxic sediment enrichments. The substrates tested included phenol, benzoate, aniline, their respective monochlorinated isomers, o-, m-, and p-cresol, and all six dimethylphenol isomers. Phenol and 2-, 3-, and 4-chlorophenol were utilized by anaerobic microorganisms, with the concomitant reduction of Fe3+ to Fe2+.
Brownawell, B.J.	003/01A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	2.002	Degradation of nonylphenol ethoxylates in estuarine sediment under aerobic and anaerobic conditions	Author(s): Brownawell, B.J., Ferguson, P.L. Grant Number(s): 003/01A, 002/98A Title: Degradation of nonylphenol ethoxylates in estuarine sediment under aerobic and anaerobic conditions Year: 2002 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: Examination of the rates and pathways of NPEO degradation in batch sediment slurry experiments using radiolabeled NPEO mixtures.
Fisher, N.S.	002/97A	Toxic Substances	Fate & Transport of Toxic Substances	SUNY at Stony Brook	Entire Estuary	1.999	Delineating metal accumulation pathways for marine invertebrates	Author(s): Fisher, N.S., Wang, W.-X. Grant Number(s): 002/97A Title: Delineating metal accumulation pathways for marine invertebrates Year: 1999 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Toxic Substances, Fate & Transport of Toxic Substances Subject: Summary: The bioavailability of metals from food and the trophic transfer of metals must be considered in establishing water and sediment quality.
Secor, D.H.	006/93A	Resource/Key Species	Sturgeon	University of Maryland	Entire Estuary	1.996	Demographic Analysis of Atlantic Sturgeon Fisheries in the New York Bight	Author(s): Secor, D.H., Stevenson, J.T. Grant Number(s): 006/93A Title: Demographic Analysis of Atlantic Sturgeon Fisheries in the New York Bight Year: 1996 Organization: University of Maryland Pages: 17 p Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Sturgeon Subject: Summary: Age, year-class, and length data for Hudson River Atlantic sturgeon are summarized for fisheries in the Hudson River and coastal regions of Long Island and New Jersey. Estimates of age-at-entry, growth rate, and mortality rate are provided to support fishery management models of the Hudson River population.
Burke, R.L.	TP/05/09	Resource/Key Species	Reptiles & Amphibians	Hofstra University	Lower Estuary	2.011	Demographic Analysis of the Jamaica Bay Diamonback Terrapin (Malaclemys terrapin) Population: Implications for Survival in an Urban Habitat	Author(s): Burke, R.L., Kanonik, A.E. Grant Number(s): TP/05/09 Title: Demographic Analysis of the Jamaica Bay Diamonback Terrapin (Malaclemys terrapin) Population: Implications for Survival in an Urban Habitat Year: 2011 Organization: Hofstra University Pages: Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: This study examines the status of nesting diamondback terrapins (Malaclemys terrapin) in Jamaica Bay, New York, during the summer of 2009.
						2.003	Demographic attributes of yellow-phase American eels(Anguilla rostrata) in the Hudson River estuary	Author(s): Grant Number(s): Title: Demographic attributes of yellow-phase American eels(Anguilla rostrata) in the Hudson River estuary Year: 2003 Organization: Pages: Publication: HRF, peer review piece River Segment: Area of Interest: , Subject: Summary: Yellow-phase American eel length and age structure, growth, dispersal, nematode infestation rates, loss rate (natural mortality and emigration), and production were measured at six site throughout the tidal portion of the Hudson River.
Hunsinger, T.W.	TP/08/01	Resource/Key Species	Reptiles & Amphibians	Hudson Valley Community Ctr.	Entire Estuary	2.002	Demography and Life History of a Wood Turtle (Clemmys insculpta) Population in the Hudson River Watershed	Author(s): Hunsinger, T.W., Titman, R.D. Grant Number(s): TP/08/01 Title: Demography and Life History of a Wood Turtle (Clemmys insculpta) Population in the Hudson River Watershed Year: 2002 Organization: Hudson Valley Community Ctr. Pages: 24 Publication: HRF, report River Segment: Entire Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: This study examined the demography and life history of a population of wood turtles in Sterling Forest State Park, Orange County, New York.
Caris, J.	GF/02/08	Resource/Key Species	Other Fish	University of Massachusetts	Entire Estuary	2.012	Describing juvenile American shad and striped bass habitat use in the Hudson River Estuary using species distribution models	Author(s): Caris, J., Juanes, F., McGarigal, K., O'Connor, M.P. Grant Number(s): GF/02/08 Title: Describing juvenile American shad and striped bass habitat use in the Hudson River Estuary using species distribution models Year: 2012 Organization: University of Massachusetts Pages: Publication: HRF, peer review piece River Segment: Entire Estuary Area of Interest: Resource/Key Species, Other Fish Subject: Summary: Species distribution models (SDMs) are currently being used to identify essential fish habitat and guide fisheries management worldwide. We present SDMs based on generalized linear mixed models (GLMM) of the fall distribution or occurrence of juvenile American shad (Alosa sapidissima) and juvenile striped bass (Morone saxatilis) in the Hudson River estuary (HRE) based on data from a fishery-independent survey.
Bond, G.C.	002/89A/004	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Columbia University	Entire Estuary	1.993	Detailed Analysis of R/V CONRAD (RC3005) Seismic Data from the Hudson River	Author(s): Bond, G.C. Grant Number(s): 002/89A/004 Title: Detailed Analysis of R/V CONRAD (RC3005) Seismic Data from the Hudson River Year: 1993 Organization: Columbia University Pages: 5) Seismic Data from the Hudson River. Publication: HRF, report River Segment: Entire Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: This report discusses Multichannel seismic data shot by R/V CONRAD in the Hudson River to image deep crustal reflectors.
Able, K.W.	001/92B	Resource/Key Species	Biological Communities	Rutgers University	Lower Estuary	1.997	Determinants of Habitat Quality for Estuarine Dependent Fishes	Author(s): Able, K.W. Grant Number(s): 001/92B Title: Determinants of Habitat Quality for Estuarine Dependent Fishes Year: 1997 Organization: Rutgers University Pages: 7 pp Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: The study determined factors affecting recruitment of estuarine-dependent fishes in New Jersey estuaries. The role of estuaries as nurseries was confirmed for several commercially and recreationally important species. The report contains a brief summary of the study and a bibliography of publications resulting from the study.
Squires, D.F.	EC/03/88	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	University of Connecticut	Lower Estuary	1.991	Determining the Area of Man-Made Land, New Jersey Shore, Lower Hudson River	Author(s): Squires, D.F. Grant Number(s): EC/03/88 Title: Determining the Area of Man-Made Land, New Jersey Shore, Lower Hudson River Year: 1991 Organization: University of Connecticut Pages: 6 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: The purpose of this research was to determine the area of man-made land on the New Jersey shore of the Lower Hudson Estuary.
Myers, D.	TP/08/12	Resource/Key Species	American Eel	Bard College	Entire Estuary	2.012	Developing a Nonlethal Field Method for Determining Fat Content of American Eels (Anguilla rostrata)	Author(s): Myers, D., Schmidt, R., Swift, S. Grant Number(s): TP/08/12 Title: Developing a Nonlethal Field Method for Determining Fat Content of American Eels (Anguilla rostrata) Year: 2012 Organization: Bard College Pages: 20 Publication: HRF, thesis River Segment: Entire Estuary Area of Interest: Resource/Key Species, American Eel Subject: Summary: American eels (Anguilla rostrata) were collected from Hudson River tributary streams, and resistance was measured with a tetrapolar Bioimpedance Assessment device. A field study showed that American eels in one Hudson River tributary (Hannacrois Creek) were significantly higher in lipid content than eels in a second tributary (Black Creek). A test of the hypothesis that eels would have a higher lipid content in upstream locations compared to eels near the tributary mouth confirmed that this was the case
Bursian, S.	013/02A	Toxic Substances	PCBs	NYU School of Medicine	Upper Hudson River	2.009	Development and Use of Real-Time Reverse Transcription-Polymerase Chain Reaction Assay to Quantify Cytochrome P4501A1 Expression in American Mink	Author(s): Bursian, S., Mayack, D.T., Roy, N.K., Wirgin, I.I. Grant Number(s): 013/02A Title: Development and Use of Real-Time Reverse Transcription-Polymerase Chain Reaction Assay to Quantify Cytochrome P4501A1 Expression in American Mink Year: 2009 Organization: NYU School of Medicine Pages: Publication: HRF, peer review piece River Segment: Upper Hudson River Area of Interest: Toxic Substances, PCBs Subject: Summary: It is believed that most, if not all, toxic effects of PCBs occur through activation of the aryl hydrocarbon receptor (AHR) pathway. We used real-time reverse transcription-PCR to quantify and compare levels of hepatic CYP1A mRNA among groups of ranched mink kits and juveniles... We found significant differences in CYP1A1 mRNA expression between mink fed the control diet and those fed a PCB-contaminated carp diet at all three treatment levels and exposure times. This study demonstrates that hepatic CYP1A1 mRNA may be a sensitive biomarker of exposure of mink to environmentally relevant levels of PCBs and may be predictive of their effects in natural populations.
Juanes, F.	TP/04/05	Information Management	Information Management	University of Massachusetts	Freshwater Tidal	2.006	Development of an Upper Hudson River Estuary GIS-Based Fish Data Resource	Author(s): Juanes, F., O'Connor, M.P. Grant Number(s): TP/04/05 Title: Development of an Upper Hudson River Estuary GIS-Based Fish Data Resource Year: 2006 Organization: University of Massachusetts Pages: 29 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Information Management, Information Management Subject: Summary: This study compiled a Geographical Information System of existing fish abundance and distribution data for the Upper Hudson River estuary.
Ahlert, R.C.	TP/04/91	Toxic Substances	UNKNOWN	Rutgers University	Watershed	1.992	Development of Bacterial Cultures Which Can Metabolize Structural Analogs of Dioxin	Author(s): Ahlert, R.C., Kosson, D.S., O'Connor, O.A., Rugge, C.D. Grant Number(s): TP/04/91 Title: Development of Bacterial Cultures Which Can Metabolize Structural Analogs of Dioxin Year: 1992 Organization: Rutgers University Pages: 25 Publication: HRF, report River Segment: Watershed Area of Interest: Toxic Substances, UNKNOWN Subject: Summary: Bacteria cultures were developed to address the breakdown of persistant chemical 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD).
Barten, P.K.	TP/01/91	Hydrodynamics & Sediment Transport	Geological Processes/Sediment Transport	Yale University	Freshwater Tidal	1.992	Development of Tidal Discharge and Sediment Flux Prediction Functions at the Tivoli Bays-Hudson River National Estuarine Research Reserve	Author(s): Barten, P.K., Marchesi, C.E. Grant Number(s): TP/01/91 Title: Development of Tidal Discharge and Sediment Flux Prediction Functions at the Tivoli Bays-Hudson River National Estuarine Research Reserve Year: 1992 Organization: Yale University Pages: 22 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Hydrodynamics & Sediment Transport, Geological Processes/Sediment Transport Subject: Summary: A hydrologic study was conducted at the Tivoli Bays, a component of the Hudson River National Estuarine Research Reserve, to measure the exchange of tidal water and total suspended sediments between the Hudson River and an adjacent freshwater tidal marsh.
Pace, M.L.	TP/06/08	Resource/Key Species	Zebra Mussels	University of Vermont	Freshwater Tidal	2.009	Did the Zebra Mussel (Dreissena polymorpha) Alter the Thermal Balance of the Hudson River?	Author(s): Pace, M.L., Seekell, D.A. Grant Number(s): TP/06/08 Title: Did the Zebra Mussel (Dreissena polymorpha) Alter the Thermal Balance of the Hudson River? Year: 2009 Organization: University of Vermont Pages: 22 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Zebra Mussels Subject: Summary: The ecological effects of the zebra mussel (Dreissena polymorpha) invasion on the Hudson River have been well documented. Higher bivalve filtration rates after the invasion increased water clarity. This should have decreased water surface albedo and may have lead to changes in water temperature. This study used the equilibrium temperature concept to explore potential changes in water temperature due to change in albedo.
Able, K.W.	001/92B	Resource/Key Species	Biological Communities	Rutgers University	Lower Estuary	1.994	Diel Variation in Immigration of Fishes and Decapod Crustaceans to Artificial Seagrass Habitat	Author(s): Able, K.W., Sogard,S.M. Grant Number(s): 001/92B Title: Diel Variation in Immigration of Fishes and Decapod Crustaceans to Artificial Seagrass Habitat Year: 1994 Organization: Rutgers University Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Biological Communities Subject: Summary: Determines whether fish or decapod immigration into an artifical seagrass habitat vary by day or night
Conover, D.O.	004/95A	Resource/Key Species	Striped Bass	SUNY at Stony Brook	Lower Estuary	2.001	Diet and Consumption Rates of Overwintering YOY Striped Bass, Morone saxatilis, in the Hudson River	Author(s): Conover, D.O., Hurst, T.P. Grant Number(s): 004/95A Title: Diet and Consumption Rates of Overwintering YOY Striped Bass, Morone saxatilis, in the Hudson River Year: 2001 Organization: SUNY at Stony Brook Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: Consumption rates were measured for young-of-the-year striped bass under varying temperature regimes. Diet composition of wild fish was also determined.
Pitman, L.	TP/06/11	Resource/Key Species	American Eel	Eckerd College, St Petersburg Fl	Freshwater Tidal	2.011	Diet of Newly Settled American Eel (Anguilla rostrata) in a Hudson River Tributary	Author(s): Pitman, L., Schmidt, R. Grant Number(s): TP/06/11 Title: Diet of Newly Settled American Eel (Anguilla rostrata) in a Hudson River Tributary Year: 2011 Organization: Eckerd College, St Petersburg Fl Pages: 17 Publication: HRF, thesis River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, American Eel Subject: Summary: Elvers of American eel (Anguilla rostrata) were collected from the tidal mouth of the Roeliff Jansen Kill, a Hudson River tributary. A total of 180 elvers collected from June through early August 2011 were examined for gut contents. Five kinds of aquatic insects comprised 94.9% of the total food items: four groups of chironomid midges (Ablabesmyia sp., Pseudochironomus sp., Thienemanniella sp., and unidentified adult midges) and an ephemeropteran (Caenis sp.).
Burke, R.L.	TP/07/06	Resource/Key Species	Reptiles & Amphibians	Hofstra University	Lower Estuary	2.007	Dietary Habits of Diamondback Terrapin (Malaclemys terrapin) in the Jamaica Bay Wildlife Refuge, New York	Author(s): Burke, R.L., Sierra, R. Grant Number(s): TP/07/06 Title: Dietary Habits of Diamondback Terrapin (Malaclemys terrapin) in the Jamaica Bay Wildlife Refuge, New York Year: 2007 Organization: Hofstra University Pages: 11 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: The diet of diamondback terrapin was examined to determine its role in nutrient transfer in the Jamaica Bay ecosystem.
Burke, R.L.	TP/05/05	Resource/Key Species	Reptiles & Amphibians	Hofstra University	Lower Estuary	2.006	Dietary Habits of Diamondback Terrapins, Jamaica Bay Wildlife Refuge, New York	Author(s): Burke, R.L., Sierra, R. Grant Number(s): TP/05/05 Title: Dietary Habits of Diamondback Terrapins, Jamaica Bay Wildlife Refuge, New York Year: 2006 Organization: Hofstra University Pages: 15 Publication: HRF, report River Segment: Lower Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: The diet of diamondback terrapin was examined to determine its role in nutrient transfer in the Jamaica Bay ecosystem.
Bridgewater, R.	TP/06/93	Resource/Key Species	Striped Bass	Simon's Rock College of Bard	Freshwater Tidal	1.994	Diets of Larval White Perch and Striped Bass in the Kingston Region of the Hudson River Estuary with Comments on the Significance of the Bosmina Bloom	Author(s): Bridgewater, R., Schmidt, R.E. Grant Number(s): TP/06/93 Title: Diets of Larval White Perch and Striped Bass in the Kingston Region of the Hudson River Estuary with Comments on the Significance of the Bosmina Bloom Year: 1994 Organization: Simon's Rock College of Bard Pages: 17 Publication: HRF, report River Segment: Freshwater Tidal Area of Interest: Resource/Key Species, Striped Bass Subject: Summary: White perch and striped bass larvae were collected simultaneously in the Kingston region of the Hudson River estuary in 1992 and examined for food habits.
Kraus, Mark L.						1.986	Differences in Tolerance to Mercury between two Populations of the Grass Shrimp, Palaeomonetes pugio	Author(s): Kraus, Mark L. Grant Number(s): Title: Differences in Tolerance to Mercury between two Populations of the Grass Shrimp, Palaeomonetes pugio Year: 1986 Organization: Pages: 112 Publication: HRF, thesis River Segment: Area of Interest: , Subject: Summary: A PhD dissertattion describing the effects of methyl mercury and mercury chloride on two populations of grass shrimp. Experiments focused on adaptive responses and pre-exposure to mercury were performed.
Capriulo, G.M.	005/84A/71	Dynamics of Food Webs	Ecosystem Processes	SUNY at Purchase	Lower Estuary	1.988	Differential Growth of Euplotes vannus Fed Fragmented Versus Unfragmented Chains of Skeletonema costatum	Author(s): Capriulo, G.M., Dexter, B.L., Schreiner, R.A. Grant Number(s): 005/84A/71 Title: Differential Growth of Euplotes vannus Fed Fragmented Versus Unfragmented Chains of Skeletonema costatum Year: 1988 Organization: SUNY at Purchase Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: To examine what effects algal fragmentation might have on growth of those ciliates that consume them, experiments were conducted in which ciliates were presented with fragmented and unfragmented algae as food. Ciliate growth was higher on the fragmented food.
Burke, R.L.	002/00A	Resource/Key Species	Reptiles & Amphibians	Hofstra University	Lower Estuary	2.000	Direct and Indirect Effects of Urbanization on Diamondback Terrapins of the Big Apple: Distribution and Predation of Terrapin Nests in a Human-Modified Estuary	Author(s): Burke, R.L., Ner, S.E. Grant Number(s): 002/00A Title: Direct and Indirect Effects of Urbanization on Diamondback Terrapins of the Big Apple: Distribution and Predation of Terrapin Nests in a Human-Modified Estuary Year: 2000 Organization: Hofstra University Pages: 28 Publication: HRF, manuscript River Segment: Lower Estuary Area of Interest: Resource/Key Species, Reptiles & Amphibians Subject: Summary: Comparison of terrapin survival and breeding on 3 areas of Gateway National Recreation Area that vary based on their level of urbanization
Capriulo, G.M.	002/83A/005	Dynamics of Food Webs	Ecosystem Processes	SUNY at Purchase	Lower Estuary	1.986	Discovery of an apostome ciliate (Collinia beringensis n	Author(s): Capriulo, G.M., Small, E.B. Grant Number(s): 002/83A/005 Title: Discovery of an apostome ciliate (Collinia beringensis n Year: 1986 Organization: SUNY at Purchase Pages: Publication: HRF, peer review piece River Segment: Lower Estuary Area of Interest: Dynamics of Food Webs, Ecosystem Processes Subject: Summary: A species of ciliate is discovered living as an endoparasite in a species of krill in the Bering Sea.
Fabrizio, M.C.						1.985	Discrimination and Classification of Striped Bass Stocks	Author(s): Fabrizio, M.C. Grant Number(s): Title: Discrimination and Classification of Striped Bass Stocks Year: 1985 Organization: Pages: 147 Publication: HRF, thesis